Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02577 ATGCCCATGGCTAAGAAACGAAAGCTTCGATCCTCCAACCCAGAACCCACCAAACCCGTCGAGCCACAGCAACAGAACCATGAGACTGTTGAACTCGACCAACAGCAACCCATCCCCGAACCAACCCTAGAAGACTCCAACACCATGGCCATCGACGAACCAAAACATGAACAAGAAGAAGAACCGCAAAACGCCGAAAGCGAACaagaggaagaggaagaggaagaggaagaAGATGAACAACAAGAGGAGCAGGAACCAGAAACTCGAGAAGGGCAACCGGGACCAGAAACCCTAGAAGCTGCAAACCAAGCCGAAGCGAACGGTAGCAATGAAGGAAACAACGAAGAAGAGGAAGAGGAGGATCTCACACTAGAAGAAGAGCCCGTGGAGAAGCTTCTGGAACCGTTCACGAAGGAGCAGCTCCACTCTCTCGTCACGCAGGCCGTGGATATGTTCCCCGAATTCGTCGATAGCGTGCGCCGGATTGCTGACGTGGACCCCGCGCACCGGAAAATCTTCGTCCACGGCCTCGGCTGGGATGCCACCGCCGAAACCCTAACCTCCGTGTTCGGGAAATACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGTAAATCAAAGGGTTACGCCTTTATCCTCTTCAAGCACAGAGACGATGCTCGAAAGGCGCTGAAACACCCTCAGAAGAAGATCGGAAACCGCACCACCTCGTGCCAGCTGGCCTCCGCTGGCCCCGTTCCGGCTCCACCGCCGAGCGTGACCCCGGTGTCTGAGTACACCCAGAGGAAGATTTTTGTGAGCAATGTGAGTGCTGAGATTGATCCTCAGAAGCTGCTTGAATTCTTCAAGCAGTTTGGAGAGGTTGAGGATGGTCCTCTTGGTTTGGATAAGAACACTGGGAAACCTAAGGGTTTTGCGCTTTTCGTGTATAAGTCTGTGGAGAGTGCTAAGAAGGCTTTGGAAGAGCCCAATAAGAACTATGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGGAGCAAGGGgtatcatcatcaacagcattctcattctcatcatcaccatcaccaccatcagcctcattatcaGAGGAAGGAGAAGAACAAGTATTCCTCCGGTGGTGGTGGACCATCACATGGAAGTGGTCATTTGATGGCGCCCTCGGGCTCTGCTGTGGGGGGTTTCAACCCTGGTGTGCCGGCCCAGGGGTTGAATCCGGTGCTTGGACAGGCGTTGACTGCATTGATTAATCAGGGAGCTGGATTGGGGCTTGGGAATCTTCTTGGAGGGCTTGGTGCCAGCAATGCAACCCGGATACCAGAATCCTCAAATGGGACAGAGCAGTGGTGTGAGACCTCATCCTGGTGCTGGTGCTCCTTACATGGGTCATTAGGCAAGAAATGGCCACACTTGGTGGGAGGGTTGGCTCTCACTAATACAAGTGTACCCTGGTTTGGAGTGAATGTCAGAGAGAAGATCAGATGGGTGTGA 1518 0.5046 MPMAKKRKLRSSNPEPTKPVEPQQQNHETVELDQQQPIPEPTLEDSNTMAIDEPKHEQEEEPQNAESEQEEEEEEEEEDEQQEEQEPETREGQPGPETLEAANQAEANGSNEGNNEEEEEEDLTLEEEPVEKLLEPFTKEQLHSLVTQAVDMFPEFVDSVRRIADVDPAHRKIFVHGLGWDATAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKHPQKKIGNRTTSCQLASAGPVPAPPPSVTPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESAKKALEEPNKNYEGHTLYCQKAVDGPKGSKGYHHQQHSHSHHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSGSAVGGFNPGVPAQGLNPVLGQALTALINQGAGLGLGNLLGGLGASNATRIPESSNGTEQWCETSSWCWCSLHGSLGKKWPHLVGGLALTNTSVPWFGVNVREKIRWV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02577 505 Coils Coil 55 86 - -
Gma02g02577 505 MobiDBLite consensus disorder prediction 63 86 - -
Gma02g02577 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 344 IPR000504 GO:0003723
Gma02g02577 505 SUPERFAMILY RNA-binding domain, RBD 163 249 IPR035979 GO:0003676
Gma02g02577 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 248 IPR000504 GO:0003723
Gma02g02577 505 SMART rrm1_1 172 244 IPR000504 GO:0003723
Gma02g02577 505 SMART rrm1_1 268 340 IPR000504 GO:0003723
Gma02g02577 505 CDD RRM_RBM24_RBM38_like 267 342 - -
Gma02g02577 505 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 3 445 - -
Gma02g02577 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 240 IPR000504 GO:0003723
Gma02g02577 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 337 IPR000504 GO:0003723
Gma02g02577 505 CDD RRM_RBM24_RBM38_like 171 246 - -
Gma02g02577 505 SUPERFAMILY RNA-binding domain, RBD 251 362 IPR035979 GO:0003676
Gma02g02577 505 MobiDBLite consensus disorder prediction 16 43 - -
Gma02g02577 505 Gene3D - 257 391 IPR012677 -
Gma02g02577 505 MobiDBLite consensus disorder prediction 1 127 - -
Gma02g02577 505 MobiDBLite consensus disorder prediction 112 127 - -
Gma02g02577 505 MobiDBLite consensus disorder prediction 343 400 - -
Gma02g02577 505 Gene3D - 42 252 IPR012677 -
Gma02g02577 505 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 3 445 - -
Gma02g02577 505 MobiDBLite consensus disorder prediction 352 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02577 Gma-Chr2 51782093 51786613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02577 263 346 C2H2 Transcription Factor Family AT2G19380 29.762 8.78e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02577 K12741 - gmx:100792637 709.523