Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02507 ATGTTATGGAGCAGCCACGTGGAGGAAGCAATTCGACATTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCCGATCGACCCGGTGAACCTGAGTGCTTATATTATTTGAGAACTGGAATGTGTGGTTATGGAACTAACTGTCGATACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGGCCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCTCCTGTGTCATTCAATACTTTAGGCCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCCTTGGAGCATACCCATTGGCTGGATCTCCTACTCCTACCTCAACAATTATTCCTACATCAGGTTTACCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGACTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCGCAAGGTGTTATACCTGTGCAGAGCTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCGAACGGTTTTCTTGGATCTAATCTTGTTTATGACTACATGAATCTGGGCGAGTCACTCTTTGGTGGGCAGGCAATAAATTCTGCTCTCCCAAATAGGCCTGATCAACCAGAATGCAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATGTCTCAATCATTGATAAATCCACTCGGCCTTCCTGTGCGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTACGGAATGTGTAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGAATGTACTTGATACTCCTCTCACCAGGGGGTTATCAAATGTACAACCACCTGAGACATCTCCTTCTAAATTAAGTGACAAGAAGCTTCAGCATTCTGATGCAAAAGCTGCTACAGAAGATTCATCCAAACAAGATGATACTACATTGAATTCCTTCCCGGCTTCCGCAGAGCCTTTACACAACTAA 1218 0.4376 MLWSSHVEEAIRHLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTGMCGYGTNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTPTSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGLQSYVPPFLSSSQGVIPVQSWNNYMGNMNPAMPNGFLGSNLVYDYMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERMSQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMNVLDTPLTRGLSNVQPPETSPSKLSDKKLQHSDAKAATEDSSKQDDTTLNSFPASAEPLHN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02507 405 Gene3D - 256 341 - -
Gma02g02507 405 Gene3D - 32 108 - -
Gma02g02507 405 SUPERFAMILY CCCH zinc finger 81 105 IPR036855 GO:0046872
Gma02g02507 405 MobiDBLite consensus disorder prediction 351 405 - -
Gma02g02507 405 SUPERFAMILY CCCH zinc finger 301 329 IPR036855 GO:0046872
Gma02g02507 405 ProSiteProfiles Zinc finger C3H1-type profile. 260 288 IPR000571 GO:0046872
Gma02g02507 405 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Gma02g02507 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 60 IPR000571 GO:0046872
Gma02g02507 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872
Gma02g02507 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 329 IPR000571 GO:0046872
Gma02g02507 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 148 IPR000571 GO:0046872
Gma02g02507 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 103 IPR000571 GO:0046872
Gma02g02507 405 MobiDBLite consensus disorder prediction 368 386 - -
Gma02g02507 405 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Gma02g02507 405 SUPERFAMILY CCCH zinc finger 39 61 IPR036855 GO:0046872
Gma02g02507 405 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 7 388 - -
Gma02g02507 405 Gene3D - 109 155 - -
Gma02g02507 405 SMART c3hfinal6 76 103 IPR000571 GO:0046872
Gma02g02507 405 SMART c3hfinal6 260 287 IPR000571 GO:0046872
Gma02g02507 405 SMART c3hfinal6 123 148 IPR000571 GO:0046872
Gma02g02507 405 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Gma02g02507 405 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Gma02g02507 405 SUPERFAMILY CCCH zinc finger 264 289 IPR036855 GO:0046872
Gma02g02507 405 SUPERFAMILY CCCH zinc finger 120 149 IPR036855 GO:0046872
Gma02g02507 405 MobiDBLite consensus disorder prediction 351 367 - -
Gma02g02507 405 ProSiteProfiles Zinc finger C3H1-type profile. 76 104 IPR000571 GO:0046872
Gma02g02507 405 PANTHER PROTEIN PHOSPHATASE RELATED 7 388 - -
Gma02g02507 405 ProSiteProfiles Zinc finger C3H1-type profile. 121 149 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02507 Gma-Chr2 51127120 51131805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02507 4 400 C3H Transcription Factor Family AT1G04990 47.059 9.55e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma02g02507 zf-CCCH 4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02507 - - gmx:100812856 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00414 14 4003039 4007035 Gma02g02507 02 51127120 51131805 GST