Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02485 ATGGCCTCTCTCCTTCCTCAACCCCAAGAAACCAAACCCACCGCCACCACCGCCACAGAAACCACTCCCAGcgaaacatctatcactgctagtgccaacaaaagcagcagcagcaacaacaacaatagtagtagcaatagtcgtaagtgcaaaggtaaaggtggccccgacaacaacaaatttaggtaccgcggcgtcagACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGTACGCGCAAGTGGCTCGGAACATTTGCCACCGCCGAGGACGCCGCCAGAGCTTACGACCGCGCCGCCATCATCCTCTACGGTTCGAGAGCACAGCTCAACCTACAACCCTCCGGTTCCTCTTCTCAATCTTCCTCTTCTCGCTCCTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCTTCTGGTTTTACTTTCAATTTTCCCTTCAACTCCGCCCCCGCCACCACCGTGCCTTACCCTTATAACAATAGTCACAATTACACTTACACCCCACCCGTGTTGTACCCTATTGATAATAGTAAGAATCACAATATTAATACAGTGCAAGTTCATCATCCACATCACTATCGTTGTCCTGAGGAAGTGGTGCAAGTGCCACATTCGGAATCTGATTTGGGGGGTTTAGGTGGGAATAATAATATTGTTGTTGATGGTTCTATTAGATCAACCTCGTACCAGCGGCATGGTTTTCTGGATAATATTAATAATAACAATAACCATGTGCATGTGCAAGTGCAACATGGGGTTTTTTCGAATCAACAGCAGCAACATCAGAATAGCGTGGTGGAGGGAGTGAATTCCTCCGTCGTGGGTTCGGTTTCGTCTTCCATGGATGCTTCTTCGGTGGATCCGGATCTGGCGTTGGTGGGGACAATGGGGCTTGGATCTTCTTCGCCTTTTTGGTCCATGGCGAACGAGGATGATTACACTGGTAGTTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAG 1017 0.4317 MASLLPQPQETKPTATTATETTPSETSITASANKSSSSNNNNSSSNSRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSGSSSQSSSSRSSSSSTQTLRPLLPRPSGFTFNFPFNSAPATTVPYPYNNSHNYTYTPPVLYPIDNSKNHNINTVQVHHPHHYRCPEEVVQVPHSESDLGGLGGNNNIVVDGSIRSTSYQRHGFLDNINNNNNHVHVQVQHGVFSNQQQQHQNSVVEGVNSSVVGSVSSSMDASSVDPDLALVGTMGLGSSSPFWSMANEDDYTGSLWDYNDPFFFDL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02485 338 Coils Coil 338 338 - -
Gma02g02485 338 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Gma02g02485 338 MobiDBLite consensus disorder prediction 1 52 - -
Gma02g02485 338 Pfam AP2 domain 62 110 IPR001471 GO:0003700|GO:0006355
Gma02g02485 338 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 336 - -
Gma02g02485 338 SUPERFAMILY DNA-binding domain 62 119 IPR016177 GO:0003677
Gma02g02485 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 9 336 - -
Gma02g02485 338 CDD AP2 62 119 IPR001471 GO:0003700|GO:0006355
Gma02g02485 338 MobiDBLite consensus disorder prediction 117 142 - -
Gma02g02485 338 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Gma02g02485 338 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Gma02g02485 338 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Gma02g02485 338 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Gma02g02485 338 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02485 Gma-Chr2 50918613 50919629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02485 48 338 AP2-EREBP Transcription Factor Family AT2G40220 42.405 9.51e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma02g02485 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02485 K09286 - gmx:100301892 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02485 02 50918613 50919629 Gma02g02485 02 50918613 50919629 ECH