Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02482 ATGAATAATGTTCTATCCGCGATGATGGTCTCCCCAGGCTTGTTACCATCAGGGACTTTGCTAGATTCTCTGATTCATGTGTGCAATGAAGTTGGCTCAATGGAGAAGTTTCCCTTGGTACACACAAGAAACGTTTCAACCATGATAAGGAGGATCAAACTTCTCTCTTCTTTGTTTGAAGAGATTCAAGAAACGGATACTCCACTCCCTCCTTCCTCGATCCTGTGTCTCACAGAACTCTTCTCTGTGATAAGAAGAGTCAAAGTTTTGATCCAAGATTGCAAGGATGGAAGTTCTCTTTGGAGTCTCATACAGTTAGAGTTCATATCCAACCAATTTTATGTGCTTGTTAAGGAGATGGGAAGGGCCCTTGATATCCTTTCCTTGAGTTTGCTTAATGTAACCTCAGATATTAAGGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCACCGAAGAGAACAGCTTATACAAGTAATGGCCAACAACAGTTTACAAAACAAGAAGAAGAAGGGGCTCGTTGACTTTGGCAAAGTGGAAGAGATATTAAGTAGCATTGGTTTGAGAACTCCATCAGATTATGAAGAGGAAATATCCAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGATTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTGATGTGCTATTCCAAATCCATGATATTCAAAGAAGGAGAGAGTGATACAAAAGAAGATTGGCACTCTTATGATAGAATCTCAATTGCACAATGGATAAACTCTGGTCATCACACATGCCCCAAAAGTGGGCAAAGGCTAATTCACACGGCTCTCATACCAAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCCATGACAACAATGTTCCAGTGGATGAGCCTACCACCGAAGGAAACAAGAACAGCAGCAAGAAGTTGAAGGAAGATGCTGTAGACCATATTTCTGCAAACAAAGCCGCTGCGGATGCTGTCAAAATGACAGCAGAATTTCTAGTTGGAAAATTGGCAACTGGTTCTGCTGACATCCAAAGGCAAGCTGCATATGAGCTTCGGTTACTCACAAAAACTGGCATGGTTAACCGAAGCGTCATAGCCGAGGTAGGGGCTATTCCCTTTCTTGTAACACTCCTAGGATCTCAAGATTCAAGAATCCAAGAGCATGCAGTGACAGCCTTGTTCAACCTCTCCATATTCGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGACAGCATAGTGGAAGTACTTGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCATCAATATATAGTTTGTCTATGGTGGATGAGTGCAAAGTGCAAATTGGAGGAAGGCCAAGGGCAATACCTGCCTTAGTCGAACTCTTGAAAGAAGGAACTCCAATAGGGAAAAGAGATGCTGCAAGTGCACTGTTCAATCTTGCAGTTTACAATCCTAACAAGGTAAGTGTTGTTAAGGCTGAGGCAGTTCCTGTGCTGGTTGAGTTGCTTATGGATGACAAGGCTGGCATAACAGATGATGCTCTTGCTGTTCTTGCTttgctcctaggttgctctgaggggctagaagagataaggaacagtagagcATTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGATCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTAGGACTGTGCAAACAAGAGGGGGAAGTGGTGGCAAGGAGGCTCTTGGCAAATCCAAGGAGCATTCCTTCACTGCAAAGCTTGGCTGCTGATGGGTCTTTGAGAGCTAGGAGAAAGGCAGATGCAGTGCTTAGGTTTCTCAATAGGTGCTGCTCTCAGCCTCATCATTGTGTTTAG 1908 0.423 MNNVLSAMMVSPGLLPSGTLLDSLIHVCNEVGSMEKFPLVHTRNVSTMIRRIKLLSSLFEEIQETDTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILSLSLLNVTSDIKEQVELLHKQAKRAELLIDPRELHRREQLIQVMANNSLQNKKKKGLVDFGKVEEILSSIGLRTPSDYEEEISKLEAEAQNQAGTGGLIVVSNINNLISLMCYSKSMIFKEGESDTKEDWHSYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHDNNVPVDEPTTEGNKNSSKKLKEDAVDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLTKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAASIYSLSMVDECKVQIGGRPRAIPALVELLKEGTPIGKRDAASALFNLAVYNPNKVSVVKAEAVPVLVELLMDDKAGITDDALAVLALLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKQEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADAVLRFLNRCCSQPHHCV 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02482 635 Gene3D - 21 132 IPR036537 GO:0007166
Gma02g02482 635 PANTHER U BOX DOMAIN-CONTAINING 17 253 - -
Gma02g02482 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Gma02g02482 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 470 512 IPR000225 GO:0005515
Gma02g02482 635 PANTHER U BOX DOMAIN-CONTAINING 257 633 - -
Gma02g02482 635 Pfam Armadillo/beta-catenin-like repeat 378 414 IPR000225 GO:0005515
Gma02g02482 635 SUPERFAMILY ARM repeat 347 624 IPR016024 -
Gma02g02482 635 SMART arm_5 375 415 IPR000225 GO:0005515
Gma02g02482 635 SMART arm_5 461 499 IPR000225 GO:0005515
Gma02g02482 635 SMART arm_5 500 540 IPR000225 GO:0005515
Gma02g02482 635 SMART arm_5 541 582 IPR000225 GO:0005515
Gma02g02482 635 SMART arm_5 416 457 IPR000225 GO:0005515
Gma02g02482 635 SMART Ubox_2 258 301 IPR003613 GO:0004842|GO:0016567
Gma02g02482 635 Pfam U-box domain 258 305 IPR003613 GO:0004842|GO:0016567
Gma02g02482 635 Gene3D - 464 624 IPR011989 -
Gma02g02482 635 SUPERFAMILY RING/U-box 256 309 - -
Gma02g02482 635 Gene3D - 321 463 IPR011989 -
Gma02g02482 635 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 253 - -
Gma02g02482 635 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 257 633 - -
Gma02g02482 635 ProSiteProfiles U-box domain profile. 258 308 IPR003613 GO:0004842|GO:0016567
Gma02g02482 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 310 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02482 Gma-Chr2 50883005 50885053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02482 23 630 U-box Gene Family AT3G46510 35.222 5.86e-104 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02482 - - gmx:100793498 1192.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02482 02 50883005 50885053 Gma02g02482 02 50883005 50885053 ECH