Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02434 ATGAAATGGGAAATAAAAAGCTCACAAAGCAAGGCACAACAAACATTAGAATGGTTTGTAATTTGTGTATTGTGTTATGTGCATATGGAAAGTTACTACTATTCTGGCTGGCCTCTGGCTCAATGCTACAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCAGTCCCAACAACAAcacaacaaacactccctcttgttgcttcttcttcttctgaccatgcagcagcatctcttcaatttggtgagttcccttcgtggcctgcacccattggagcagaagttagagctgcaagtgcttccaagagccacagccaagcagagaaaaggcgcagggacaggatcaatgcACAGCTTGCAACTCTCAGAAAACTCATTCCCATGTCTGATAAGATGGATAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCATGGATGTTGTTAGCAAAGCCGTTACTGTTCCAACTGAAACTGATGAAGTAACAATTGACTACCACCAATCTCAAGATGAAAGCTACACAAAAAGAGTGAACATATTAAAGGAAAACATCATAATCAAAGCTTCTGTTTGCTGTGATGATCGACCAGAACTGTTCCCTGAGCTCATCCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCTCAAAGGATAGTGATGAAGATAATAATAGTGTTTGCCTTAGCACTCTCAAACAATCACTTAAATCTGCTGTGAACAAAATTGCTTCGTTATCTGTGGCAACAAATTATCCCTCTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTACGTACAATAA 885 0.3153 MKWEIKSSQSKAQQTLEWFVICVLCYVHMESYYYSGWPLAQCYNSAPNSDQLSPFSVPTTTQQTLPLVASSSSDHAAASLQFGEFPSWPAPIGAEVRAASASKSHSQAEKRRRDRINAQLATLRKLIPMSDKMDKAALLGSVVDHVKDLKRKAMDVVSKAVTVPTETDEVTIDYHQSQDESYTKRVNILKENIIIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSDEDNNSVCLSTLKQSLKSAVNKIASLSVATNYPSRSKRQRFFLPSHYVQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02434 294 PANTHER TRANSCRIPTION FACTOR BHLH51 49 293 - -
Gma02g02434 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Gma02g02434 294 CDD ACT_UUR-ACR-like 198 233 - -
Gma02g02434 294 Pfam Helix-loop-helix DNA-binding domain 103 149 IPR011598 GO:0046983
Gma02g02434 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 153 IPR036638 GO:0046983
Gma02g02434 294 SMART finulus 106 155 IPR011598 GO:0046983
Gma02g02434 294 Gene3D - 95 157 IPR036638 GO:0046983
Gma02g02434 294 CDD bHLH_AtAIG1_like 95 173 - -
Gma02g02434 294 PANTHER TRANSCRIPTION FACTOR BHLH30 49 293 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02434 Gma-Chr2 50471393 50473066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02434 39 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.182 1.98e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g02434 HLH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02434 - - gmx:100787169 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00493 14 4652794 4654377 Gma02g02434 02 50471393 50473066 GST
Gma18g00240 18 1948226 1949532 Gma02g02434 02 50471393 50473066 PCT
Gma11g02335 11 38773231 38774901 Gma02g02434 02 50471393 50473066 PCT
Gma02g02434 02 50471393 50473066 Gma18g00240 18 1948226 1949532 PCT
Gma02g02434 02 50471393 50473066 Gma11g02335 11 38773231 38774901 PCT