Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02400 ATGACATTGTGGATTGTTGGATTTGGTGATCCTATCGAAGGAGGTAAACTTGTTACCGTGTGTGACTCGAAGGACACTGCACATGGCAACGATGAAGGTGAAGGGGAAAATCACGTTCGTTCAAATTATTGTAAAAGAGAAGTGCATAAAGGGCATTCCCATCAGCCAAATCCAGGAGAGACTCCTTTAGGTCCTCCGTCTGTGCTAGACTGTAGACAAGTTGGTGGCATAGTTTGTGCACCTATTGAGAAGGTTTGGACCTTGGTCTCTAAAACTAAAAGACTACCCGAATGGATGCCAATGGTAGAAAGATGCAGTTCCTTGGCTGATGACGATGAACCGGGCTATGTTAGGCTTGTCTTAGGTTTCATGTTTCCTCAACAAGATGGAGAAAGGTCATGGAACAAGGAGAGGTTGGTAGCTGTTGCTTGGATCCAACTCATCCAAGGGAAATTTGCTTGGCCACCAAGTAACGACAAAGAGAAACAGTTTCTAACTTTTTCTTGGCTGGTTGTAAATAATCTCTCTTTTCTCTATTGGATCATAGCTTTCTGCACCCTCTTCCTCTTAGGTTCCCATATTTTTCTCTCTTGTCGTGGACCTCAACTTTGTAGGCTCGCCTTAGAAAAAACCTTCTTTTCTTTTTGGTGGGGAATTCCTTATACTCACACACCAAAATTCTGGTACACCATGATTTTTCCAAGATTTTGTACGAATCTAAAAGGTATGGAATTGGAAACCCTCTACACCCCTTGTTATATGCCAAACTCAAATTGGTTTGTGCAAGAGAGCCTCAGCACAGAGTGGACTAGAGAAGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCCGCTATGATCCCTGGGAAGACTGTGTTTGATGTGATCAAGCAATATAGGGAACTGGAAGAAGATGTGAGTGAAATCGAAGCAGGGCATGTTCCGATTCCCGGCTACCTTGCATCTTCTTTCACCTTTGAGCTGGTTGACAACCACAACTATGATGGATGCAGAAGAAGGCTTGCACCTGTCAGAGGCTCTGATCAAGAGAGAAAGAAAGGAGTCCCATGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTTTGAAGTATGGTAAAGGAGATTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCAACCCAAGTTGCTAGCCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTGGAGGCAAAGATAAAAGGAGACCTAGCATCCATGATATGACCACTGTTAATCTTACAGAAACTTCTGCATCAGACAAGAACAAGCCTCCTGTGATTGCACCACAGCAGAAGCTGAATAGCATGTCAAAAGTACAGCTGGACTGGACTAGTAGCCACTACAATGATGGATCACTCATGGTTTTCAACCCAAATAGTGATGACTTGTTTGTGTCATCTTCATCTGATGTCACTTCCATGGCCCTGAAAATGCAAGGGCAAGATCTCTATGAATGTGCCTTACGTGAGGCTTATGCCAAGTCACAGTGA 1563 0.4351 MTLWIVGFGDPIEGGKLVTVCDSKDTAHGNDEGEGENHVRSNYCKREVHKGHSHQPNPGETPLGPPSVLDCRQVGGIVCAPIEKVWTLVSKTKRLPEWMPMVERCSSLADDDEPGYVRLVLGFMFPQQDGERSWNKERLVAVAWIQLIQGKFAWPPSNDKEKQFLTFSWLVVNNLSFLYWIIAFCTLFLLGSHIFLSCRGPQLCRLALEKTFFSFWWGIPYTHTPKFWYTMIFPRFCTNLKGMELETLYTPCYMPNSNWFVQESLSTEWTREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGHVPIPGYLASSFTFELVDNHNYDGCRRRLAPVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDMTTVNLTETSASDKNKPPVIAPQQKLNSMSKVQLDWTSSHYNDGSLMVFNPNSDDLFVSSSSDVTSMALKMQGQDLYECALREAYAKSQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02400 520 CDD SANT 368 412 IPR001005 -
Gma02g02400 520 Gene3D - 73 178 IPR023393 -
Gma02g02400 520 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 245 519 - -
Gma02g02400 520 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 364 416 IPR006447 GO:0003677
Gma02g02400 520 SUPERFAMILY Bet v1-like 78 140 - -
Gma02g02400 520 SMART sant 265 317 IPR001005 -
Gma02g02400 520 SMART sant 365 415 IPR001005 -
Gma02g02400 520 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 361 417 IPR017930 -
Gma02g02400 520 ProSiteProfiles SANT domain profile. 264 319 IPR017884 -
Gma02g02400 520 Gene3D - 367 418 - -
Gma02g02400 520 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 245 519 IPR043363 -
Gma02g02400 520 ProSiteProfiles Myb-like domain profile. 361 413 IPR001005 -
Gma02g02400 520 Gene3D - 262 328 - -
Gma02g02400 520 CDD SANT 268 314 IPR001005 -
Gma02g02400 520 Pfam Myb-like DNA-binding domain 368 412 IPR001005 -
Gma02g02400 520 SUPERFAMILY Homeodomain-like 363 417 IPR009057 -
Gma02g02400 520 ProSiteProfiles SANT domain profile. 369 417 IPR017884 -
Gma02g02400 520 SUPERFAMILY Homeodomain-like 267 321 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02400 Gma-Chr2 50040866 50050217 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma02g02400 Myb_DNA-binding 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02400 - - ccaj:109813886 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02400 02 50040866 50050217 Gma02g02400 02 50040866 50050217 ECH
Gma14g00529 14 5083590 5084350 Gma02g02400 02 50040866 50050217 GST