Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02390 ATGACCGAAGAAGACCGCTCCGCCGAAGAAAACGTCCGCAATGGCGTCGCCGCGAAGGATCTCGGCGGCAAGGAGAAGGACGTCGCGGAAGTGACTTCGGCCGCTGAAGGTTTGGTTGCCGGAAGCGTGAAGGGACCTTGGTCACCGGAGGAGGACGCGCTGTTGAGCCGATTGGTGGCGCAGTTCGGGGCAAGGAACTGGGGCATGATCGCGCGGGGAGTGCCAGGACGCTCCAGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTTGACCCTTGCTTGAAACGCAAGCCCTTCACTGAGGAAGAGGATAACATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAATAATTGCTAAGCTTCTTCCAGGTAGAACAGATAATGCAATCAAGAATCACTGGAATTCTACACTGACGCGCAAGCGTATGGAAATGGGAAGATATGTCCCAGCACATGCTGATGTGATCGAAGATGGTACTGGTAACTTTGAAAAAACAAAAGCATCCTCTGAAGAAACCATGTCAATTGGGGATATCAATTCATTGAATCCTGCAGAAGTCAGAAATGTCATGATGAATGATGAAACTAAACCTCCAAcaaaagatgatgctaaagtggaggaacatgctactcttcatcgaccagtagcacgtGAGACTCGAGGGAAAGCCATTTGCATGGTTCACTTCTAG 702 0.4687 MTEEDRSAEENVRNGVAAKDLGGKEKDVAEVTSAAEGLVAGSVKGPWSPEEDALLSRLVAQFGARNWGMIARGVPGRSSKSCRLRWCNQLDPCLKRKPFTEEEDNIIVSAHAIHGNKWAIIAKLLPGRTDNAIKNHWNSTLTRKRMEMGRYVPAHADVIEDGTGNFEKTKASSEETMSIGDINSLNPAEVRNVMMNDETKPPTKDDAKVEEHATLHRPVARETRGKAICMVHF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02390 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 90 IPR017930 -
Gma02g02390 233 Gene3D - 43 95 - -
Gma02g02390 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Gma02g02390 233 CDD SANT 46 88 IPR001005 -
Gma02g02390 233 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Gma02g02390 233 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Gma02g02390 233 SMART sant 43 92 IPR001005 -
Gma02g02390 233 SMART sant 95 143 IPR001005 -
Gma02g02390 233 Gene3D - 97 157 - -
Gma02g02390 233 SUPERFAMILY Homeodomain-like 42 137 IPR009057 -
Gma02g02390 233 ProSiteProfiles Myb-like domain profile. 44 90 IPR001005 -
Gma02g02390 233 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Gma02g02390 233 PANTHER MYB PROTEIN-RELATED 16 225 - -
Gma02g02390 233 MobiDBLite consensus disorder prediction 1 21 - -
Gma02g02390 233 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 16 225 - -
Gma02g02390 233 CDD SANT 98 141 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02390 Gma-Chr2 49973607 49977259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02390 39 213 MYB Transcription Factor Family AT3G55730 55.000 2.21e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma02g02390 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02390 K09422 - gmx:100817109 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02390 02 49973607 49977259 Gma14g00536 14 5147968 5152610 ECH
Gma02g02390 02 49973607 49977259 Gma02g02390 02 49973607 49977259 ECH