Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02389 ATGTTGGTTACTGAGGACAAGTCTCATGTTGCTGTTGCTATAGACAATGATGGCTGTTGTCACCGGAGCTCTGCCGGCGGTGAGGGGTGCTCCGACGCTAGCGACCGGACAGATAAGGAGCAAAGGAGGTCCTCCCATGTTTCTGGCACTGAGATTGTGGGAGTGTGTGAGGAGAGAGGATCAGAGTGTTCAGTGGAGGTGGATCTGGTTCCTGAGGTTAAGGTGCATTTGGCCAATGAGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGGACTCCCATTGAGTTGGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCCGAGGCTTGGTTCAAGATCAAGGGAAACAAAACTTGTGAAATCTGTGGATCAGTTGCACGCAATGTAGCCGGAGCTATTGAAATTCAAATGACAGAACAGTGGAATGAGGCAAACGATGCTTCCACGGCACCATCATCTGGACCGGCACCACTGGCAGAAACTCAAAATTTCTGGCAGGGTCACCGTTTTTTGAATTTTCTGCTAGCCTGTATGGTGTTTGCCTTTGTCATATCCTGGCTTTTTCACTTTAATGTGCCCTCTTGA 624 0.4904 MLVTEDKSHVAVAIDNDGCCHRSSAGGEGCSDASDRTDKEQRRSSHVSGTEIVGVCEERGSECSVEVDLVPEVKVHLANEERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSVARNVAGAIEIQMTEQWNEANDASTAPSSGPAPLAETQNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02389 207 ProSiteProfiles Zinc finger RING-CH-type profile. 76 142 IPR011016 GO:0008270
Gma02g02389 207 PANTHER ZINC FINGER, RING-CH-TYPE 5 207 - -
Gma02g02389 207 CDD RING_CH-C4HC3_MARCH 84 136 - -
Gma02g02389 207 SUPERFAMILY RING/U-box 80 138 - -
Gma02g02389 207 PANTHER OS01G0850200 PROTEIN 5 207 - -
Gma02g02389 207 MobiDBLite consensus disorder prediction 22 46 - -
Gma02g02389 207 MobiDBLite consensus disorder prediction 32 46 - -
Gma02g02389 207 Pfam RING-variant domain 84 135 IPR011016 GO:0008270
Gma02g02389 207 SMART ringv_2 83 136 IPR011016 GO:0008270
Gma02g02389 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 144 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02389 Gma-Chr2 49959951 49965007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02389 38 207 C3H Transcription Factor Family AT5G05830 64.804 2.09e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02389 - - gmx:100816407 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02389 02 49959951 49965007 Gma14g00537 14 5155896 5160740 ECH
Gma03g00657 03 20389571 20393148 Gma02g02389 02 49959951 49965007 ECH
Gma18g01777 18 49518290 49520867 Gma02g02389 02 49959951 49965007 ECH
Gma07g01308 07 17229101 17233526 Gma02g02389 02 49959951 49965007 ECH
Gma02g02389 02 49959951 49965007 Gma02g02389 02 49959951 49965007 ECH
Gma14g00537 14 5155896 5160740 Gma02g02389 02 49959951 49965007 GST