Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma02g02368 | ATGGCCATGAATAATGGCGATGGAACCGACGGAGGGGCATTGCAGAGGGTGCTTTACATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAAAGGACGCCGCTCTTGACGCCGGTTGCCGTTAGGGTTCCGCCGTGTGATTATTCTTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCAGAATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAACCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTTTATACATGGGGATGGAAAGAATGCATTCCCTCTGGGAAGGTATTTGGTGAATCATCAACAGGGGTAAGTCTTGAAAAAGATGTGCCAGGAAGGCATACTCCATTGTTCACAGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAGATCTACTGGAGGTACTGCCTCCAGTAACAGTGGAGAAGAAAGTACAAAGCGAAGGAGAGTGTCTTCAGCAAAGCAAACAGCTGAAAGCTCGTCATCCAGTGATGATAGTCTGACAGCATTCCCGTGTCTTGTCACACTAAATCCAGGGATAAGGATAGCTAGTGTTGCAGCTGGTGGACGTCATACACTAGCATTGTCAGGACTGGTGTGGGCTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTCTGGGTTCCAGAATACGTATGGTTTCCACTCCTCATCTTGTTCCTTGCATTGATTCCTCTTATTATGTTAAAGATAGATCTGCTACACTGGCTCGAGGAAACATGGGTTCAGAGGGACAGACTTTTAGAATTCCTGGAAGTTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAATTACCGATGATGAACTAAGCCCAACTTGTGTATCTTCCCTATTGGGTATCCACATAGAGGGAATTGCTGCAGGACTGTGGCATACAGTCTGTACATCTGCTGATGGTGATGTGTATGCATTTGGTGGGAATCAGTTTGGGCAGTTGGGAACTGGTGCTGATCAAGCCGAGACTCTACCAAGACTAGTGGATTCTCCGAGTTTGAAAAATTTGCATGCTAAGAATATATCTTGCGGTGCTCGCCACACTGCTTTAGTAACAGAGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAGCTGGGCCTTGGGGACGTGATTGACCGTAACATTCCTTCTGAAGTCACCATTGAAGGTTGTGTCCCTAAAAATGTTGCTTGTGGTTGGTGGCATACTCTTCTTCTGGCCGAGTCCCACACTTGA | 1428 | 0.4797 | MAMNNGDGTDGGALQRVLYMWGYLPGALPQRTPLLTPVAVRVPPCDYSWNDVCGGGCGFAIAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTETSIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGKVFGESSTGVSLEKDVPGRHTPLFTEQVSPRSQGSRSTGGTASSNSGEESTKRRRVSSAKQTAESSSSSDDSLTAFPCLVTLNPGIRIASVAAGGRHTLALSGLVWAWGYGGEGQLGLGSRIRMVSTPHLVPCIDSSYYVKDRSATLARGNMGSEGQTFRIPGSYIKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGITDDELSPTCVSSLLGIHIEGIAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETLPRLVDSPSLKNLHAKNISCGARHTALVTEGGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVPKNVACGWWHTLLLAESHT | 475 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma02g02368 | 475 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 303 | 313 | IPR000408 | - | |
| Gma02g02368 | 475 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 103 | 127 | - | - | |
| Gma02g02368 | 475 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN | 15 | 474 | - | - | |
| Gma02g02368 | 475 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 237 | 316 | IPR000408 | - | |
| Gma02g02368 | 475 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 15 | 474 | - | - | |
| Gma02g02368 | 475 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 67 | 119 | IPR000408 | - | |
| Gma02g02368 | 475 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 409 | 419 | IPR000408 | - | |
| Gma02g02368 | 475 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 368 | 418 | IPR000408 | - | |
| Gma02g02368 | 475 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 236 | 313 | IPR000408 | - | |
| Gma02g02368 | 475 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 423 | 470 | IPR000408 | - | |
| Gma02g02368 | 475 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 317 | 364 | IPR000408 | - | |
| Gma02g02368 | 475 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 317 | 368 | IPR000408 | - | |
| Gma02g02368 | 475 | PRINTS | Chromosome condensation regulator RCC1 signature | 371 | 387 | IPR000408 | - | |
| Gma02g02368 | 475 | PRINTS | Chromosome condensation regulator RCC1 signature | 352 | 365 | IPR000408 | - | |
| Gma02g02368 | 475 | PRINTS | Chromosome condensation regulator RCC1 signature | 423 | 439 | IPR000408 | - | |
| Gma02g02368 | 475 | PRINTS | Chromosome condensation regulator RCC1 signature | 460 | 475 | IPR000408 | - | |
| Gma02g02368 | 475 | PRINTS | Chromosome condensation regulator RCC1 signature | 318 | 334 | IPR000408 | - | |
| Gma02g02368 | 475 | MobiDBLite | consensus disorder prediction | 141 | 206 | - | - | |
| Gma02g02368 | 475 | Gene3D | - | 6 | 145 | IPR009091 | - | |
| Gma02g02368 | 475 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 369 | 422 | IPR000408 | - | |
| Gma02g02368 | 475 | MobiDBLite | consensus disorder prediction | 159 | 181 | - | - | |
| Gma02g02368 | 475 | SUPERFAMILY | RCC1/BLIP-II | 30 | 473 | IPR009091 | - | |
| Gma02g02368 | 475 | Gene3D | - | 279 | 475 | IPR009091 | - | |
| Gma02g02368 | 475 | Gene3D | - | 191 | 278 | IPR009091 | - | |
| Gma02g02368 | 475 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 423 | 473 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma02g02368 | Gma-Chr2 | 49759522 | 49764761 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma02g02368 | - | - | gmx:100807837 | 941.799 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma02g02368 | 02 | 49759522 | 49764761 | Gma14g00563 | 14 | 5405263 | 5410464 | ECH | |
| Gma02g02368 | 02 | 49759522 | 49764761 | Gma02g02368 | 02 | 49759522 | 49764761 | ECH | |
| Gma14g00563 | 14 | 5405263 | 5410464 | Gma02g02368 | 02 | 49759522 | 49764761 | GST | |
| Gma18g00326 | 18 | 2703345 | 2713294 | Gma02g02368 | 02 | 49759522 | 49764761 | PCT | |
| Gma11g02255 | 11 | 37868249 | 37874616 | Gma02g02368 | 02 | 49759522 | 49764761 | PCT | |
| Gma02g02368 | 02 | 49759522 | 49764761 | Gma18g00326 | 18 | 2703345 | 2713294 | PCT | |
| Gma02g02368 | 02 | 49759522 | 49764761 | Gma11g02255 | 11 | 37868249 | 37874616 | PCT |