Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02352 ATGTCTTCCCATTGGTGTCACCGGTGCAACAAATTTGTGAGAGCATGGAGACAAGAAATAATGCCGGTTTGTCCCGATTGCGACAGCGGATTCGTCGAAGAGATCCAACCTTCGAACCGCTCCGTCCACCACGTGGAAACCCGCCGCCGTAGGTTCCCGACGGGGACGGCAATGTACATGATCGGCCACAGTTCTAATAACTCCGACTACAACCCCCGTTCCTCTCGCCGTCATCATTGCCGGTACGTTACCAGCCACCGGTCACCGCTTAATCCGGTCATCATGCTCCAGAGCGAGGGAACAAGCCGGGACCGTGGCTCCGGCTTCGACCTTTTCTTCGACGACGGAGCCGGTTCCGGTCTCCGACCACTCCCTCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGGTTTGACCGTGTCATGGACCAGCTTTCCCAGGTGGAATCGAACTCCGGCATGGGAAGTAACGACCAGCATAACCACGCGCCGGCGTCGAAGTCCGCCGTGGAGTTGCTCCCGTCGATCGAGATCGACGAGACTCACACGGCGACTGAATCGCACTGTGCGGTTTGCAAGGAGCCCTTCGAGCTTTCCACCATGGCAAAGGAAATGCCATGCAAACACATATACCACGCGGAATGCATCTTACCGTGGCTAGCAATTAAAAACTCGTGCCCCGTGTGCCGGCACGAGTTGCCGTGCGAGAATGTCGCACGTGCGAGATTGGAGCGCGTGGAAGAGGAGGAGGAGGAAGAGAACAACAACAATGTGGGATTAACGATTTTGAGGTTACCCGGTGGAGGGTTTGCCGTGGGGAGATTAGGAAGAAGAGAGGGTGAGAGAGAGGTTAACGTGCCTCTTGTGTACACGGAAGTGGATGGTGGGTTCAACTTCAACAACGTTGTTGTGGGTGAACCGAGGAGGGTTTCGTGGTCGGTGTCGGAGTCTAGAGGGAGCAGAAGAGGTGGCGCGTTTAGGAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGAGTTGGCCCTAATCGTTCTTCTAACACTTCGAGAACTACGGTGATGAGGAGTAATAGTTTTAGGGCTTCTTCTCGTCCTAATAACGTGGGTCCCTCTCCACCTTCTTCGCGTAGGACTTGGTCAATGGATGTCAACGAGGGAACCAGACCATGGTAA 1176 0.5468 MSSHWCHRCNKFVRAWRQEIMPVCPDCDSGFVEEIQPSNRSVHHVETRRRRFPTGTAMYMIGHSSNNSDYNPRSSRRHHCRYVTSHRSPLNPVIMLQSEGTSRDRGSGFDLFFDDGAGSGLRPLPPRMSEFLLGTGFDRVMDQLSQVESNSGMGSNDQHNHAPASKSAVELLPSIEIDETHTATESHCAVCKEPFELSTMAKEMPCKHIYHAECILPWLAIKNSCPVCRHELPCENVARARLERVEEEEEEENNNNVGLTILRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGFNFNNVVVGEPRRVSWSVSESRGSRRGGAFRRMFNGLFSCLRGGGVGPNRSSNTSRTTVMRSNSFRASSRPNNVGPSPPSSRRTWSMDVNEGTRPW 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02352 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Gma02g02352 391 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Gma02g02352 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 335 - -
Gma02g02352 391 MobiDBLite consensus disorder prediction 148 167 - -
Gma02g02352 391 Pfam Protein of unknown function (DUF1117) 257 362 IPR010543 -
Gma02g02352 391 SMART ring_2 188 228 IPR001841 -
Gma02g02352 391 SUPERFAMILY RING/U-box 173 233 - -
Gma02g02352 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 335 - -
Gma02g02352 391 Coils Coil 235 262 - -
Gma02g02352 391 MobiDBLite consensus disorder prediction 341 383 - -
Gma02g02352 391 MobiDBLite consensus disorder prediction 148 163 - -
Gma02g02352 391 MobiDBLite consensus disorder prediction 339 391 - -
Gma02g02352 391 Pfam zinc-ribbon 3 35 IPR039525 GO:0061630
Gma02g02352 391 CDD RING-H2_RNF181 188 232 - -
Gma02g02352 391 Pfam Ring finger domain 187 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02352 Gma-Chr2 49613810 49614985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02352 123 236 C3H Transcription Factor Family AT5G01980 39.474 4.17e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02352 - K11982 gmx:106796723 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02352 02 49613810 49614985 Gma14g00579 14 5573372 5574655 ECH
Gma18g01687 18 47332210 47333637 Gma02g02352 02 49613810 49614985 ECH
Gma07g01252 07 16295225 16296148 Gma02g02352 02 49613810 49614985 ECH
Gma02g02352 02 49613810 49614985 Gma02g02352 02 49613810 49614985 ECH