Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02346 ATGCCTTCTCTCATCGCCATTGTGACCCTCATAGCCGTTGTTCTGACTTCCACCGAGGCGAGGATCCCGGGCGCCTACAGCGGCGGCGCGTGGGAGACCGCGCACGCCACGTTCTACGGCGGCAGCGACGCGTCGGGGACAATGGGCGGCGCGTGCGGGTACGGGAACCTGTACAGCCAGGGCTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACAACGGGCTGAGCTGCGGTGCCTGCTTCGAGATAAAGTGCGCCAACGACCCCAGCTGGTGCCACGCTGGCAGCCCCTCCATCTTCGTAACCGCCACAAACTTCTGCCCCCCAAACTACGCTCTTCCGAACGACAATGGAGGATGGTGCAACCCTCCTCGGCCTCACTTCGACCTGGCCATGCCCATGTTCCTCAAAATCGCTCAGTACCGCGCCGGCATCGTCCCCGTCTCTTACCGCAGGGTGCCTTGCCGTAAGCAGGGAGGGATGAGGTTCACGATCAACGGTTTCCGTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGACGAGCGTGAAAGGGTCGAAGACTGGGTGGATGAGCATGAGCCGCAACTGGGGTCAGAACTGGCAATCAAACGCTGTTCTGGTTGGTCAGTCACTCTCCTTCAGGGTCACAGCCAGTGACCGACGCACCTCCACCTCCTGGAACCTCGTACCCGCCAATTGGCAATTTGGTCAAACATTCACCGGCAAAAATTTCAAAGTCTAA 774 0.5982 MPSLIAIVTLIAVVLTSTEARIPGAYSGGAWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPSWCHAGSPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIVKTSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNLVPANWQFGQTFTGKNFKV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02346 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Gma02g02346 257 SMART dpbb_1 66 153 IPR007112 -
Gma02g02346 257 Gene3D - 164 255 IPR036749 -
Gma02g02346 257 PANTHER EXPANSIN-A15 4 256 IPR002963 GO:0009664
Gma02g02346 257 Gene3D - 17 159 IPR036908 -
Gma02g02346 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Gma02g02346 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Gma02g02346 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Gma02g02346 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Gma02g02346 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Gma02g02346 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Gma02g02346 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Gma02g02346 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Gma02g02346 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Gma02g02346 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Gma02g02346 257 PANTHER EXPANSIN-A6 4 256 - -
Gma02g02346 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Gma02g02346 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Gma02g02346 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Gma02g02346 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Gma02g02346 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Gma02g02346 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Gma02g02346 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Gma02g02346 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Gma02g02346 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Gma02g02346 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02346 Gma-Chr2 49524639 49526505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02346 1 257 Expansin Gene Family AT2G39700 83.268 5.64e-166 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02346 - - gmx:100803242 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02346 02 49524639 49526505 Gma14g00584 14 5690498 5692459 ECH
Gma18g01665 18 46708425 46713409 Gma02g02346 02 49524639 49526505 ECH
Gma07g01232 07 16060415 16064554 Gma02g02346 02 49524639 49526505 ECH
Gma11g01259 11 10732993 10735054 Gma02g02346 02 49524639 49526505 ECH
Gma12g00557 12 4664488 4666971 Gma02g02346 02 49524639 49526505 ECH
Gma13g03005 13 44534715 44536116 Gma02g02346 02 49524639 49526505 ECH
Gma02g02346 02 49524639 49526505 Gma02g02346 02 49524639 49526505 ECH
Gma14g00584 14 5690498 5692459 Gma02g02346 02 49524639 49526505 GST
Gma18g00357 18 3085445 3087144 Gma02g02346 02 49524639 49526505 PCT
Gma11g02218 11 37448228 37450037 Gma02g02346 02 49524639 49526505 PCT
Gma02g02346 02 49524639 49526505 Gma18g00357 18 3085445 3087144 PCT
Gma02g02346 02 49524639 49526505 Gma11g02218 11 37448228 37450037 PCT