Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02339 ATGCTGGCGCTACTTCAGAACTGCTCCATGCCCCTCGCACGTGCGGTACGCCTACCACCTCGCACGCACGTGCGACCTTGTTTCACTGCCGTGGGCTACGCATCCATTTCCCCACGTGCCAACTCCCAGTCTCAGGTTCTCCTCGGCTTGTCCGACAAGGAACTGCAACAACTTGCCCTTGACCTCGGTCAGGCAACATATAGGGGCAAACAACTTCATCATTTTTTATACCAGAGGAAGCTCAGAGAAATTCAGGATTTCACTCAGTTGCCTCAGGGATTTAGGAATACTCTAGAGGAAGCTGGATGGAAGGTGGGGCGCTCTCCTATTTTCGAAACTGTAACTGCAGCTGATGGAACTGTTAAGTTGTTGTTGAAGTTGGAGGACAATAGATTGATTGAAACTGTTGGCATTCCAGTTATGGTTGATAAAGGCTTGACTCGCCTCACAGCATGTGTCTCATCACAGGTTGGTTGCCCTTTACGCTGCTCTTTTTGTGCCACTGGAAAAGGGGGGTTTTCAAGGAATCTTCAGAGACATGAAATAGTTGAACAGGTCTTGGCCATTGAGGAGGTCTTCAAGAATAGGGTGACAAATGTAGTGTTTATGGGAATGGGTGAACCAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCATTGCTTGAATAAGGATGTGCAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCTACTTTAGCTGTGAGCTTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCCTACCCATTGGATGCACTTATGAGTGACTGCAGAGAATACTTTCAGCAAACTAGTAGGCGGGTTTCCTTTGAATATGCACTTTTAGCTGGAGTGAATGACTCAGTAAACCATGCATTAGAGCTTGCTGAATTACTCCATCGATCGGGCAGCGGATATCACGTCAACTTGATACCTTTCAATCCAATAGAAGGCTCCGAGTATCAGCGTCCTTCCAAGAGAGCAGTGCTTGCATTTTCTGGTGCTTTGGAGTCCTCTAAAATAACTGTTAGTGTACGTCAAACCAGAGGACTGGATGCAAATGCAGCTTGTGGTCAGCTACGGAATAAGTTCCAGAAAACTCCTGTAGTCACCGACCCTTTTGATCTTGCAGTCACAGACACTTCTATGCCATACAATAACAAGTTTGCACTTGCTCTCCGTAGACAACGAATCAAAGTCTTCTTCTTCTTCTTTCTATTCCTCACTCAAGGGTTAGGGATGCGTCGGAACAGCCCTGCATACTACAGTCCTCCGCGGCGAGGATACGGCGGTGGTGGCCgaggaggaggaggaggaggaggaggaggaggGTCCGGCAGGAGGGGGTTCGGTGGAGGCAGGCGCAGGGACAGCAATGGGAGCCTCTTGGTTCGTAACATTCCCCTCGATTGCAGACCCGAGGAGCTTCGCGTCCCTTTCGAGCGATTTGGACCTGTTCGTGACGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCCTTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGAAGAGACGAGAAAAAGACCAGAGGAGATGCGCCACAGGACTAGTAGGTTAAGAGGACCAGCGGGCTATGGAGGGCAAAGGTCTTCTCGTTACGGGCGTTCTCGATCTCGCTCAGTTACCAGATCACGCTCACCACCTTATCACTCTGGTTCTAGGAATCGATATCGCTCAAGGCATGTTTCTTTGAAGTCCTATTCGCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCTGAGCACCCCAGATCACCAAGAGGTCCTCCCAGGGAGAGGGATGGTGAACAGAAGCGTAGGTCTTATTCTCCTGCTTATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGATGCTGATCGTGGCGTGGAAGATGAGGTTGCAGGTCGCTGGCAATGTGCTGTTAGGCTTCTGTACATTTCCTGTAACTTATCGTGA 2151 0.4723 MLALLQNCSMPLARAVRLPPRTHVRPCFTAVGYASISPRANSQSQVLLGLSDKELQQLALDLGQATYRGKQLHHFLYQRKLREIQDFTQLPQGFRNTLEEAGWKVGRSPIFETVTAADGTVKLLLKLEDNRLIETVGIPVMVDKGLTRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVLAIEEVFKNRVTNVVFMGMGEPMLNLKAVLEAHHCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMSDCREYFQQTSRRVSFEYALLAGVNDSVNHALELAELLHRSGSGYHVNLIPFNPIEGSEYQRPSKRAVLAFSGALESSKITVSVRQTRGLDANAACGQLRNKFQKTPVVTDPFDLAVTDTSMPYNNKFALALRRQRIKVFFFFFLFLTQGLGMRRNSPAYYSPPRRGYGGGGRGGGGGGGGGGSGRRGFGGGRRRDSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTSRLRGPAGYGGQRSSRYGRSRSRSVTRSRSPPYHSGSRNRYRSRHVSLKSYSPAPRRQSDYSVSPRRQAEHPRSPRGPPRERDGEQKRRSYSPAYGNGIEQNQSNGYAEKSMYKSDADRGVEDEVAGRWQCAVRLLYISCNLS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02339 716 PANTHER 23S RRNA METHYLTRANSFERASE 37 393 IPR040072 -
Gma02g02339 716 SUPERFAMILY RNA-binding domain, RBD 480 590 IPR035979 GO:0003676
Gma02g02339 716 SFLD Radical SAM 42 390 IPR007197 GO:0003824|GO:0051536
Gma02g02339 716 SMART rrm1_1 484 557 IPR000504 GO:0003723
Gma02g02339 716 CDD Radical_SAM 158 351 - -
Gma02g02339 716 Pfam Radical SAM superfamily 154 311 IPR007197 GO:0003824|GO:0051536
Gma02g02339 716 MobiDBLite consensus disorder prediction 636 662 - -
Gma02g02339 716 MobiDBLite consensus disorder prediction 446 480 - -
Gma02g02339 716 Gene3D - 477 617 IPR012677 -
Gma02g02339 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 485 554 IPR000504 GO:0003723
Gma02g02339 716 SFLD adenosine C2 methyltransferase (RlmN-like) 42 390 IPR004383 GO:0006364|GO:0008173
Gma02g02339 716 MobiDBLite consensus disorder prediction 562 680 - -
Gma02g02339 716 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 42 387 IPR027492 GO:0030488|GO:0070475
Gma02g02339 716 ProSiteProfiles Radical SAM core domain profile. 145 375 IPR007197 GO:0003824|GO:0051536
Gma02g02339 716 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 37 393 - -
Gma02g02339 716 Gene3D Aldolase class I 108 392 IPR013785 -
Gma02g02339 716 SUPERFAMILY Radical SAM enzymes 122 345 - -
Gma02g02339 716 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 44 389 IPR027492 GO:0030488|GO:0070475
Gma02g02339 716 MobiDBLite consensus disorder prediction 588 610 - -
Gma02g02339 716 Gene3D - 45 101 - -
Gma02g02339 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 483 561 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02339 Gma-Chr2 49469282 49478766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02339 466 545 Eukaryotic Initiation Factors Gene Family AT3G11400 38.272 5.63e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02339 K06941 - gmx:100801657 818.15