Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02328 ATGGCACTCTCTTTGACATCTAATGGGGTCAATGAGTACCAAAAATGTGTGGTTGAAGAGGAAGATGGCTCACAAAGTACTAATGGGCTCAGCAATGATTCAGCTTCAGCCATAACCCATTCTCCTCCTCTATGTAGCAATAGCAATGAGTATGTTCATAATAAGAGCACACATTACCAACTTGAAGAAGCAGAATCTCTGATTAACTTCAAAGCCAATGAGTACAACACCCTCATACAAGGTAGTGAATCTTTTCTTAGCGTTCAGAAGAGTTGGCTGTTCCCCAAAGAGAGTAATTTGCATGAAGGTTATAACCAATGGAACCATGCTATTAGTCCAAAAAGCACCACAGATATGCGCCTAGTGCAAAATTTCAGTTGCTTTGAAACTTCCGCTGACTATAGTTCCATATTCAATGGTGCAAAAGAGAAGCAACATGGTGAAAGTTCATCATCTGGGTGGCTATACTCTGAACCAAATGTCCCTAGCGATAGCCTGCTTGAGTCAGCAGCACAAGAGTTGGTCTTGACAAAACgctcttctatgGGAGAGAATATGCAAGCTACCAATGCCAAGAAGCCATGCACAAGTGCGAGTAAAGCAGCAAAACCAAAGTTAAACCCATTCAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTACAAGAACTGGTCCCCAACGGTTCCAAGGTTGATTTGGTCACAATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCAGTCCAAGGTGGAAAAGCCCCAGACATTTCTCAAGTGAGACAAGCCATCGATGCTATTCTTTCATCTCAAAGATGA 888 0.4167 MALSLTSNGVNEYQKCVVEEEDGSQSTNGLSNDSASAITHSPPLCSNSNEYVHNKSTHYQLEEAESLINFKANEYNTLIQGSESFLSVQKSWLFPKESNLHEGYNQWNHAISPKSTTDMRLVQNFSCFETSADYSSIFNGAKEKQHGESSSSGWLYSEPNVPSDSLLESAAQELVLTKRSSMGENMQATNAKKPCTSASKAAKPKLNPFKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02328 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 267 IPR036638 GO:0046983
Gma02g02328 295 MobiDBLite consensus disorder prediction 185 217 - -
Gma02g02328 295 CDD bHLH_AtIND_like 210 271 - -
Gma02g02328 295 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 293 - -
Gma02g02328 295 Pfam Helix-loop-helix DNA-binding domain 218 258 IPR011598 GO:0046983
Gma02g02328 295 MobiDBLite consensus disorder prediction 20 39 - -
Gma02g02328 295 Gene3D - 209 265 IPR036638 GO:0046983
Gma02g02328 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 257 IPR011598 GO:0046983
Gma02g02328 295 SMART finulus 214 263 IPR011598 GO:0046983
Gma02g02328 295 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02328 Gma-Chr2 49378026 49379461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02328 61 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 49.174 3.10e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g02328 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02328 - - gmx:100803231 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00599 14 5837537 5839273 Gma02g02328 02 49378026 49379461 GST
Gma18g00368 18 3219442 3220924 Gma02g02328 02 49378026 49379461 PCT
Gma11g02204 11 37275337 37276942 Gma02g02328 02 49378026 49379461 PCT
Gma02g02328 02 49378026 49379461 Gma18g00368 18 3219442 3220924 PCT
Gma02g02328 02 49378026 49379461 Gma11g02204 11 37275337 37276942 PCT