Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02264 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGCTTATTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACCAACAGAGAAGTTGATGGTCACATACCCAATTACCCGAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGTTGCAGCCGCTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCGTTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGCGCTGCTGAGAAAGTTTTCCCTCCATTGGATTTCTCACAGCAACCACCTGCGCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGAGgacagccaaaacgacaccttcttacaacaggctggagtgtatttgttagtgccaaacgactagtagctggagatTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTCATGCCATCCTCAGTTCTATCTAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGCTTTACAGTGTTCTATAACCCAAGGGCTAGTCCATCTGAATTTGTCATACCGCTTTCAAAATATATCAAAGCTGTGTACCATACGCGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGATCTGTTAAGGTTGGTTGGGACGAATCAACCGCTGGAGAGAGACAGCCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACGTTTCCAATGTATCCATCTCTATTTCCCCTCAGATTGAAACGACCCTGGCATCCGGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCAACTAATGGGCTTATGTGGCTGAGGGGTGGACCTGGAGACCAAGCTCTCAATTCCCTGAATTTTCAAGGTTCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTTTACTTGCAAATGATCATAATCAGCACTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGGAGTGGAGATTTAATGAGACAACAAATAATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTCCTTTGCAGCTTCAGCAACCGCAAGCAATTCAGCAATCCGTATCTTCTAATAATATTCTACAGCCACAAGCCCAAGTAATGGCAGAGAACCTGTCTCAGCACCTCCTTCAGAAATCACACAACAATCGAGAAGACCAAACACAGCAGCAGCAGCAGCAGCGGCACACTTATCAAGATACAGTTTTACTTCAAAGTGATCAGCTCCATCAGAGGCAACACTCTGGTCTACCTTCACCGTCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTTCAGTTTCACCAGGACAAAACATTCTTGGTTCACTTTGTCCTGAAGGGAGTGGTAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCTCAACAATCATGGGCCCCAAAATTCACACCGTTGCAGGTTAATGCTTTTGGCAACTCAATGCAACATGTGCAGTATTCTGGAAAAGATACCGCAATGGTGCCACCACATTGTAACTCGGACACCCAAAATCCTATTCTATTTGGGGTCAACATCGATTCATCTGGTCTTCTGCTCCCTACGACTGTCCCGCGTTATACTACTGCATCAGCGGATAGTGATGCATCAGCAATGCCATTAGGAGAGTCTGGATTCCAGTCTCCTTTATATCCTTGTGGTCAAGATTCATCAGAGTTGGTGCAAAGTGCAGGGCAAGTTGACCCTCAAAACCAGACACGAACATTCGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGACATCTCCCGGTTCAGCAGTTATCATGAGCTGCGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTATGGTATATCAAAATACTTTCACCTGAAGATATCCATAAAATGGGAGAACAAGCCCTGGAATCCCTTGGTCCAAGTCCAGGACAGAGGCTGAATAGCACTGGTGCAGATTCTCATGAAATTGTTTCAGGACTACCATCAATTGGCTCCCTTGAATACTGA 2544 0.4434 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVAYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQALNSLNFQGSGLLPWMQQRMDPTLLANDHNQHYQAMFASGLQNLGSGDLMRQQIMNFQQPFNYLQQSGNPNPPLQLQQPQAIQQSVSSNNILQPQAQVMAENLSQHLLQKSHNNREDQTQQQQQQRHTYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSSMKFPASVSPGQNILGSLCPEGSGNLLNLSRSGQSMLTEQLPQQSWAPKFTPLQVNAFGNSMQHVQYSGKDTAMVPPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADSDASAMPLGESGFQSPLYPCGQDSSELVQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIHKMGEQALESLGPSPGQRLNSTGADSHEIVSGLPSIGSLEY 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02264 847 Gene3D - 717 810 - -
Gma02g02264 847 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma02g02264 847 MobiDBLite consensus disorder prediction 468 488 - -
Gma02g02264 847 MobiDBLite consensus disorder prediction 546 565 - -
Gma02g02264 847 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Gma02g02264 847 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Gma02g02264 847 SMART B3_2 128 230 IPR003340 GO:0003677
Gma02g02264 847 ProSiteProfiles PB1 domain profile. 721 805 IPR000270 GO:0005515
Gma02g02264 847 MobiDBLite consensus disorder prediction 814 835 - -
Gma02g02264 847 MobiDBLite consensus disorder prediction 546 563 - -
Gma02g02264 847 CDD B3_DNA 127 228 IPR003340 GO:0003677
Gma02g02264 847 Pfam AUX/IAA family 717 805 IPR033389 -
Gma02g02264 847 Gene3D - 292 364 - -
Gma02g02264 847 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Gma02g02264 847 MobiDBLite consensus disorder prediction 819 834 - -
Gma02g02264 847 PANTHER AUXIN RESPONSE FACTOR 1 829 - -
Gma02g02264 847 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 829 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma02g02264 847 SUPERFAMILY CAD & PB1 domains 719 795 - -
Gma02g02264 847 Gene3D - 126 229 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02264 Gma-Chr2 48725969 48736520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02264 98 821 B3 DNA Binding Superfamily AT5G37020 68.126 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma02g02264 AUX_IAA 7.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02264 - - gmx:100780393 1674.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g02038 14 51498662 51505927 Gma02g02264 02 48725969 48736520 GST
Gma18g00436 18 4138607 4145527 Gma02g02264 02 48725969 48736520 PCT
Gma11g02076 11 34761811 34768509 Gma02g02264 02 48725969 48736520 PCT
Gma02g02264 02 48725969 48736520 Gma18g00436 18 4138607 4145527 PCT
Gma02g02264 02 48725969 48736520 Gma11g02076 11 34761811 34768509 PCT