Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02243 ATGCACGCTCAAATTAAGCGCATTGACACTGTCCGTGCCTACACATTTGGCGTTCTATATTTTGTGGAGGTTGACACTGAACTACCAGAGGATTTACCCTTAAAAGAAGCTCATGCCATTGGAGAGAGCCTTCAGATAAAGCTAGAGAAACTTCCAGAAGTTGAGAGGGCATTTGTTCATCTAGACTTCGAATGTGATCACAAACCAGAGCACTCGATCAGTTCTTACCAAACTGCCGGACACTCAGCCTTAAATTCAAGTTCATGTACAACAAATGTCGCTCATTTATTTGGCATTCAATATAGACGTGACACTATTGCATATCAACACCAATACTCTATTGTCATCAAGTTCAGTACTTCAGTTCACTGCGCCTTCCTCTCCTTTTCGATGGCAAAGGGTTGCTCCAACAACACTTATGAAGAGGCTAGAAAACAAAGACTTGAAGAAAACAAAAAGAGGTTTGAGGATTTGGGAATTTCGAGGATTTCAAAAAACTTGACTGAAATCGCAAGTTCTGCAAAGAAGAAGCTGCGTCATGTTCCTAAACAGAAAACAAAGAAGACAAATGTTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGAAACCCAGTTCGTTCATACCGTGAAGATGTGAACATAGACCTTCCACCCTTGCGGAAGAGGTCAAGGTCAAGTTCTTCATCATGGGGAAGTTACATTGCGAGGCCTCTAGATGAAATCAAAGAAGCAACAAAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCAGAGGCAATCCAAATCAATTTGAACTCATCAAATCCATCATTTATCAAGTCAATGGTTCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATCTGCCAAAAACTTTACATGACATGGTTTTAGAAGATGAAAATGGCTCAGAATATGAGGCTGTTTACATTGGCAACAGAGCTGGGCTTAGTGGTGGTTGGAGAGCATTTGCATTGGATCATAAACTCGATGATGGTGATGCCCTTGTTTTTGAATTGATTGAAGCTTCAAGATTTAAGATTTATATTGTAAGAGCATTTCCAGATTCAGTTGAAGAAAAGGGAAATAATATTTTAGAGGAAGAAGGAAATGTGCGTGCAACCAAAGCACCAAAAGCTGCCTGTAATCTTGAATCGGAATGTAAGACAAAAAAGCCAAAACAGGCTGCAGTTTATGAAACTAAGGAATCAGAGAGTTCTCAGGAATATCTTCTAGATAGCAGCATTGACAACGAAGTGAAACCACAGGGAGTAAATCCAACTAATAAGGAAACTAAATTTTCTCAGAAAAATACGCCAAAGAAATCTAAATATCCTGCTACTGCTGATTCAAAAGGGAAAGTGCAAATTAAAACTGAGAAACCAAAGGCATCTATAAAGCTGTCAAACAATACAAGGAAGTCGAAAGAAGGTATAAATGAAATTGGTGGTTCAGACAAGTTAGAGAAGAATGAGTTTGTTCAGGATGCTGATAGCAAGTTAGAGAAAGTTGAACTAGTTGAAGAAGCAAGAAAATGTGTCACAAAAAAGCTAGAAAAAACCAGCTCCAAATTTTTCAGAAAGAAAGCATAA 1614 0.3916 MHAQIKRIDTVRAYTFGVLYFVEVDTELPEDLPLKEAHAIGESLQIKLEKLPEVERAFVHLDFECDHKPEHSISSYQTAGHSALNSSSCTTNVAHLFGIQYRRDTIAYQHQYSIVIKFSTSVHCAFLSFSMAKGCSNNTYEEARKQRLEENKKRFEDLGISRISKNLTEIASSAKKKLRHVPKQKTKKTNVEVEPRRSSRVRNPVRSYREDVNIDLPPLRKRSRSSSSSWGSYIARPLDEIKEATKEERLCALEAAEAIQINLNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTLHDMVLEDENGSEYEAVYIGNRAGLSGGWRAFALDHKLDDGDALVFELIEASRFKIYIVRAFPDSVEEKGNNILEEEGNVRATKAPKAACNLESECKTKKPKQAAVYETKESESSQEYLLDSSIDNEVKPQGVNPTNKETKFSQKNTPKKSKYPATADSKGKVQIKTEKPKASIKLSNNTRKSKEGINEIGGSDKLEKNEFVQDADSKLEKVELVEEARKCVTKKLEKTSSKFFRKKA 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02243 537 Coils Coil 138 158 - -
Gma02g02243 537 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 4 64 IPR036837 -
Gma02g02243 537 SMART B3_2 270 361 IPR003340 GO:0003677
Gma02g02243 537 MobiDBLite consensus disorder prediction 400 499 - -
Gma02g02243 537 MobiDBLite consensus disorder prediction 174 202 - -
Gma02g02243 537 Gene3D - 244 361 IPR015300 -
Gma02g02243 537 Pfam Dimerisation domain of Zinc Transporter 3 62 IPR027470 -
Gma02g02243 537 SUPERFAMILY DNA-binding pseudobarrel domain 265 359 IPR015300 -
Gma02g02243 537 MobiDBLite consensus disorder prediction 407 452 - -
Gma02g02243 537 Pfam B3 DNA binding domain 270 358 IPR003340 GO:0003677
Gma02g02243 537 MobiDBLite consensus disorder prediction 470 485 - -
Gma02g02243 537 Gene3D Cation efflux protein, cytoplasmic domain 1 63 IPR036837 -
Gma02g02243 537 CDD B3_DNA 268 359 IPR003340 GO:0003677
Gma02g02243 537 ProSiteProfiles B3 DNA-binding domain profile. 270 361 IPR003340 GO:0003677
Gma02g02243 537 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 133 374 - -
Gma02g02243 537 MobiDBLite consensus disorder prediction 185 202 - -
Gma02g02243 537 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 133 374 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02243 Gma-Chr2 48494571 48509923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02243 140 360 B3 DNA Binding Superfamily AT5G58280 51.613 1.31e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma02g02243 B3 4.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02243 - - gmx:100786265 764.607