Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02234 ATGTCCGTACACTCAAAACTGAAGCACCACCCCATGAACCTTGCAACCCCAAGTTCCCATTTTGACAACGACCCACCATGCAAAACCAAGACCAAAACCCAAAGGAGGCTCCTTCGGATCATAGTCACCGACCATGACGCCACCGATTCAGACTCCGACGAAGAAGAAGAACAACAACAACAAACAACAAGAGTGAAGAGAGAAATCACCCAAATCAACATGCAACTTCCTCTCTCATACAATAGTTCCTTTCCCTCTTCATCTTCTTATTACTCTTCGGCTTCAGCTTGCACTTCATCGGAACAAAACCTAAAGTGTAAGAGACCAAACAAAAAGCCGCCACCGTTCTCCGCCGTGGTCCGCCGCCGCAACAACAAGTTTCGCGGCGTCCGGCAGCGGCCTTGGGGGCGGTGGGCAGCCGAGATCCGCGACCCCACCCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCTACGGAGTACGACAGAGCCGCCGTGAAACTCAAGGGCCCGAACGCCGTCACCAACTTTCCTCTCACGCCGGAGGCCGCGGCGGAGGCTCCGGTGGTCTCCGTCGACAACCTCAGCTCTGACGGCGGCGCGTCGTACTCCGACTTAGTGGCCTCTCCCACGTCCGTTTTAGCCTACGAGTGCGACTCGACGCCGTTCGACGGTTTCCGTTACCTCGACGTGGAGGCGTTCGAGTTCCACATCGATGCGCCGTTAAGTTTGCCGGACGTTAACGTTGCGCTGACGTGTCATCACGGGAAGAAGGAGGAGGAGGTGGCGTTCGATGAATTCGATATCGACGAATTCATGACTTGGCCTTACTAG 849 0.5607 MSVHSKLKHHPMNLATPSSHFDNDPPCKTKTKTQRRLLRIIVTDHDATDSDSDEEEEQQQQTTRVKREITQINMQLPLSYNSSFPSSSSYYSSASACTSSEQNLKCKRPNKKPPPFSAVVRRRNNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDRAAVKLKGPNAVTNFPLTPEAAAEAPVVSVDNLSSDGGASYSDLVASPTSVLAYECDSTPFDGFRYLDVEAFEFHIDAPLSLPDVNVALTCHHGKKEEEVAFDEFDIDEFMTWPY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02234 282 MobiDBLite consensus disorder prediction 44 65 - -
Gma02g02234 282 Gene3D AP2/ERF domain 125 192 IPR036955 GO:0003700|GO:0006355
Gma02g02234 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 29 226 - -
Gma02g02234 282 CDD AP2 126 183 IPR001471 GO:0003700|GO:0006355
Gma02g02234 282 PIRSF PTI6 8 282 IPR017392 GO:0003700
Gma02g02234 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 226 - -
Gma02g02234 282 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Gma02g02234 282 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Gma02g02234 282 MobiDBLite consensus disorder prediction 1 32 - -
Gma02g02234 282 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Gma02g02234 282 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Gma02g02234 282 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Gma02g02234 282 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02234 Gma-Chr2 48391737 48392585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02234 28 223 AP2-EREBP Transcription Factor Family AT4G27950 44.500 7.72e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma02g02234 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02234 K13434 - gmx:100817278 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g02014 14 51158193 51160033 Gma02g02234 02 48391737 48392585 GST
Gma18g00480 18 4480588 4481660 Gma02g02234 02 48391737 48392585 PCT
Gma11g02030 11 34089788 34091311 Gma02g02234 02 48391737 48392585 PCT
Gma02g02234 02 48391737 48392585 Gma18g00480 18 4480588 4481660 PCT
Gma02g02234 02 48391737 48392585 Gma11g02030 11 34089788 34091311 PCT