Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma02g02234 | ATGTCCGTACACTCAAAACTGAAGCACCACCCCATGAACCTTGCAACCCCAAGTTCCCATTTTGACAACGACCCACCATGCAAAACCAAGACCAAAACCCAAAGGAGGCTCCTTCGGATCATAGTCACCGACCATGACGCCACCGATTCAGACTCCGACGAAGAAGAAGAACAACAACAACAAACAACAAGAGTGAAGAGAGAAATCACCCAAATCAACATGCAACTTCCTCTCTCATACAATAGTTCCTTTCCCTCTTCATCTTCTTATTACTCTTCGGCTTCAGCTTGCACTTCATCGGAACAAAACCTAAAGTGTAAGAGACCAAACAAAAAGCCGCCACCGTTCTCCGCCGTGGTCCGCCGCCGCAACAACAAGTTTCGCGGCGTCCGGCAGCGGCCTTGGGGGCGGTGGGCAGCCGAGATCCGCGACCCCACCCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCTACGGAGTACGACAGAGCCGCCGTGAAACTCAAGGGCCCGAACGCCGTCACCAACTTTCCTCTCACGCCGGAGGCCGCGGCGGAGGCTCCGGTGGTCTCCGTCGACAACCTCAGCTCTGACGGCGGCGCGTCGTACTCCGACTTAGTGGCCTCTCCCACGTCCGTTTTAGCCTACGAGTGCGACTCGACGCCGTTCGACGGTTTCCGTTACCTCGACGTGGAGGCGTTCGAGTTCCACATCGATGCGCCGTTAAGTTTGCCGGACGTTAACGTTGCGCTGACGTGTCATCACGGGAAGAAGGAGGAGGAGGTGGCGTTCGATGAATTCGATATCGACGAATTCATGACTTGGCCTTACTAG | 849 | 0.5607 | MSVHSKLKHHPMNLATPSSHFDNDPPCKTKTKTQRRLLRIIVTDHDATDSDSDEEEEQQQQTTRVKREITQINMQLPLSYNSSFPSSSSYYSSASACTSSEQNLKCKRPNKKPPPFSAVVRRRNNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDRAAVKLKGPNAVTNFPLTPEAAAEAPVVSVDNLSSDGGASYSDLVASPTSVLAYECDSTPFDGFRYLDVEAFEFHIDAPLSLPDVNVALTCHHGKKEEEVAFDEFDIDEFMTWPY | 282 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma02g02234 | 282 | MobiDBLite | consensus disorder prediction | 44 | 65 | - | - | |
Gma02g02234 | 282 | Gene3D | AP2/ERF domain | 125 | 192 | IPR036955 | GO:0003700|GO:0006355 | |
Gma02g02234 | 282 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED | 29 | 226 | - | - | |
Gma02g02234 | 282 | CDD | AP2 | 126 | 183 | IPR001471 | GO:0003700|GO:0006355 | |
Gma02g02234 | 282 | PIRSF | PTI6 | 8 | 282 | IPR017392 | GO:0003700 | |
Gma02g02234 | 282 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 29 | 226 | - | - | |
Gma02g02234 | 282 | PRINTS | Ethylene responsive element binding protein signature | 127 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Gma02g02234 | 282 | PRINTS | Ethylene responsive element binding protein signature | 149 | 165 | IPR001471 | GO:0003700|GO:0006355 | |
Gma02g02234 | 282 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Gma02g02234 | 282 | SUPERFAMILY | DNA-binding domain | 126 | 184 | IPR016177 | GO:0003677 | |
Gma02g02234 | 282 | Pfam | AP2 domain | 126 | 175 | IPR001471 | GO:0003700|GO:0006355 | |
Gma02g02234 | 282 | ProSiteProfiles | AP2/ERF domain profile. | 126 | 183 | IPR001471 | GO:0003700|GO:0006355 | |
Gma02g02234 | 282 | SMART | rav1_2 | 126 | 189 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma02g02234 | Gma-Chr2 | 48391737 | 48392585 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma02g02234 | 28 | 223 | AP2-EREBP Transcription Factor Family | AT4G27950 | 44.500 | 7.72e-42 | 145 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Gma02g02234 | AP2 | 1.5e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma02g02234 | K13434 | - | gmx:100817278 | 519.235 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma14g02014 | 14 | 51158193 | 51160033 | Gma02g02234 | 02 | 48391737 | 48392585 | GST | |
Gma18g00480 | 18 | 4480588 | 4481660 | Gma02g02234 | 02 | 48391737 | 48392585 | PCT | |
Gma11g02030 | 11 | 34089788 | 34091311 | Gma02g02234 | 02 | 48391737 | 48392585 | PCT | |
Gma02g02234 | 02 | 48391737 | 48392585 | Gma18g00480 | 18 | 4480588 | 4481660 | PCT | |
Gma02g02234 | 02 | 48391737 | 48392585 | Gma11g02030 | 11 | 34089788 | 34091311 | PCT |