Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02230 ATGGAGGTTGAGGTTTGCATGAACGTTTCGTGCAAGAATGGCTATGCTAGAGAATGGAAGAAGGGGTGGCCTTTGCGATCGGGTGGATTCGCTAGACTCTGCCACAAGTGCGGATCTGCCTATGAAAATTTAATTTTCTGTCAGAAATTTCACCTACATCAAACGGGGTGGAGAGAGTGTTCCTTTTGCAACAAGACTTTACACTGCGGATGTATTGCATCGAGCTCTATGTTTGAGTACCTTGATTATGGAGGCATAGGTTGTGTTACCTGTGTAAAGACTTCGCAACTTAATTTGATACGGGATACTGAAAACACTATCGGGTCTGTTAGATCAATAAAAAACAATGCAAGTGATCGTCATACTGAACATATGGATTCTAGATTATTGGTGGATGGTGCTGGCAAAGGAAACCTTATGCAGTTGCGTAGGCATGTTGAAGCTAGTGAATCCAGCCGTTGGCAACGAGCTGAGAGAGATGGCATAGATTCATGTATTGGTCCAAACAGGCAAGATGATAGAAGATTTTCAAATGTGATGAAACTGTCTGGTCACTCATTAACATTTACAACATTAGATAATAACAGACCAACATGGGAGACACAAACTATGCACAAATCAAGTTCACAGAATATGTCTCTGGGAACCTCATCAGGAAATTCTGTCCTGCCTTCTGCTTTAGACATTGCAGAAAGGAGACTTGAGGGTAAAACATCGTTTTGTCCCTTTCATCAAGGGCAAAGACTTTTCTCCATATCTAAACCATTGATGGATGGGATAGCCATTAATCTGGAAGCTAGTAAAGGTGTGATTTCTCAGGAACGCGTTGCCCGGCCACCTGCTAATGGGAAAACCAAGAATCTGTTACTTTCTCGATACTGGCCTAGGATTACTGATCAAGAGCTGGAGAAATTGTCCGGAGATTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAGGCTTACTTTCCTCCTATTTCACAGTCAGAAGGTCTTCCTTTGCAGTTCAAAGATGTGAAGGGAAATGACTGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGAATGTATGTATTGGAGGGAGTAACCCCTTGCATGCAGGCCATGCAATTAAATGCTGGTGATACTGTAATGTTTAGTCGGATAGATCCCGGAGGCAAATTTGTTATGGGTTCCAGAAGGGCATCAGATTCTATAGATACACAGGAGGCCTCTACTTTTTCTCACTCCAATGATTTTGCAACAAAGGAAGCAACCTTTTCTGGTGCAACTGCAAATCTGCACTCAGGAAACAGTTATCCTGATCTTCTCCGCACAACGAAAGGGAATGGCGAACCTTACTTAAACAGATATTCAGAACATTTGCGTTTCAGTACCGAAACTGCTAATTGTCTACAAACTGAAAATGATATGGAGTTGAGAGTTACGTGGGAAGAAGCACAAGACTTGCTTCATCCACCACCTTGTGTCAAGCCAAGTGTTGAAACAATTGAGGACAAAGAATTTGAGGAATTTGAGGAACCCCCGGTTTTTGGAAAGGGAACTACAATCAATGACCACCCATCTGGGTCTTTGAGCTCTGCATCAGAGGAAATGAGTTCGAGGGAGTTGGAAAATATTCTTGTAACCAGCAAAGATACTAAAAAGCGAAGAATTATGGAAAAACCTGAGTCAATCCAAGAACACGAGTCTGTTGGCTTAGATGATCATATTGACCCTACTGATTCATCAGCTGGTGCCACAACCAAGCATCCAAGGCACCGTTCTGGATGCACTTGTATTGTGTGCATTCAGCCCCCAAGTGGAAAAGGGAGGCATAGGCCAACATGCACTTGCCTTGCCTGCATGACCGTGAGGCGCCGGTTCAAGACCCTTATGATGCGTAAGAAGCAACGCGAATCAGATGCTACCCAAAAGGATCAGATTCATCACAGTGATGAGGGAGACACCAATGGTGGTGCATCAAGAGATGGTGCAATTGCAAGTAACTTGGAGAATGAGGGAAGCCTCAACAGAATGGATGAACTTGGTGCAGGACAAATAGACCTGAATAGTCATCCCGATCATGAAGACATGCAAGTGGCTATGTGA 2157 0.4349 MEVEVCMNVSCKNGYAREWKKGWPLRSGGFARLCHKCGSAYENLIFCQKFHLHQTGWRECSFCNKTLHCGCIASSSMFEYLDYGGIGCVTCVKTSQLNLIRDTENTIGSVRSIKNNASDRHTEHMDSRLLVDGAGKGNLMQLRRHVEASESSRWQRAERDGIDSCIGPNRQDDRRFSNVMKLSGHSLTFTTLDNNRPTWETQTMHKSSSQNMSLGTSSGNSVLPSALDIAERRLEGKTSFCPFHQGQRLFSISKPLMDGIAINLEASKGVISQERVARPPANGKTKNLLLSRYWPRITDQELEKLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSEGLPLQFKDVKGNDWTFQFRFWPNNNSRMYVLEGVTPCMQAMQLNAGDTVMFSRIDPGGKFVMGSRRASDSIDTQEASTFSHSNDFATKEATFSGATANLHSGNSYPDLLRTTKGNGEPYLNRYSEHLRFSTETANCLQTENDMELRVTWEEAQDLLHPPPCVKPSVETIEDKEFEEFEEPPVFGKGTTINDHPSGSLSSASEEMSSRELENILVTSKDTKKRRIMEKPESIQEHESVGLDDHIDPTDSSAGATTKHPRHRSGCTCIVCIQPPSGKGRHRPTCTCLACMTVRRRFKTLMMRKKQRESDATQKDQIHHSDEGDTNGGASRDGAIASNLENEGSLNRMDELGAGQIDLNSHPDHEDMQVAM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02230 718 MobiDBLite consensus disorder prediction 650 673 - -
Gma02g02230 718 SUPERFAMILY DNA-binding pseudobarrel domain 314 412 IPR015300 -
Gma02g02230 718 MobiDBLite consensus disorder prediction 539 556 - -
Gma02g02230 718 CDD B3_DNA 315 416 IPR003340 GO:0003677
Gma02g02230 718 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 546 - -
Gma02g02230 718 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 548 717 - -
Gma02g02230 718 MobiDBLite consensus disorder prediction 531 556 - -
Gma02g02230 718 MobiDBLite consensus disorder prediction 649 682 - -
Gma02g02230 718 Gene3D - 295 422 IPR015300 -
Gma02g02230 718 MobiDBLite consensus disorder prediction 569 592 - -
Gma02g02230 718 Pfam B3 DNA binding domain 317 416 IPR003340 GO:0003677
Gma02g02230 718 MobiDBLite consensus disorder prediction 569 609 - -
Gma02g02230 718 ProSiteProfiles B3 DNA-binding domain profile. 317 418 IPR003340 GO:0003677
Gma02g02230 718 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 546 - -
Gma02g02230 718 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 548 717 - -
Gma02g02230 718 SMART B3_2 317 417 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02230 Gma-Chr2 48299820 48307488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02230 1 717 B3 DNA Binding Superfamily AT2G30470 41.804 5.77e-180 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma02g02230 B3 7.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02230 - - gmx:100782543 1446.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g02006 14 51013161 51020464 Gma02g02230 02 48299820 48307488 GST
Gma18g00486 18 4546098 4554180 Gma02g02230 02 48299820 48307488 PCT
Gma11g02020 11 33799023 33807474 Gma02g02230 02 48299820 48307488 PCT
Gma02g02230 02 48299820 48307488 Gma18g00486 18 4546098 4554180 PCT
Gma02g02230 02 48299820 48307488 Gma11g02020 11 33799023 33807474 PCT