Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02209 ATGTGGAATATTGTCTTTGGGGTCTCAGTTTGGGCCATTTGGATGGCTAGGAGTCAAGTTATTTTCATTGACCAACAGTGGAATTTTGATCAGGTTGTTAATAGGGCCAAATTTGTTAGCTTTGAGGTTATTCAAGGGATGGGTATTAATGTTTATATACTTGTGTCTCCTTATGAAAGGCATGTTAGATGGGTGTCTCCTCAATCTGGTTGGGTCAAATTTAATGTAGATGACTCAGTTAGAAGCACCACCACTGCGGCTTTTAGCTCCTCTCATTCCAACGGTGGCCGGAAAACCCATTTGAGCGGTGCTGCCAGCCAACTTTTCTCCTTTCTCTCACAATCAACTGGGAATTGTTCCCTTTCAATCCCTCTTTTTGGTGTTATGGAGATATCTTTGTTAAAGGTGCTATCTGATGCGATATCCTCATTTTCGCATTTATCATTTTCTGAAAGAATGAAGTCAGAACCTGTATCAAAGTATTACCAAAAGGCAGAGAAGATGCTTAAGTTGTTGAAGCCGATTATTGATACTACTGTTTTTTCTGATTTAGCTTCTAACAAATTGCTTAGTAAGCTATTTGAGGAACTTAGTCTAGCTGTTGATGAGTTGAGGGAGCTTAGTCTGAACTGGCATCCATTATCTAGTAAATTTTACTTTGTTATTCAAGTTGATCCCTTAATATCAACAATTCAGGATTTGGGACTCAGCATTTTACAACAGCTGAAGGCTTCACCTCAAAGTCTCCTTGATAATTTACGAGATGAAGCATCATCAACCATTAAAAAAGCTATTATGGAACAACTGGAAGGTGTAGGGCCCAGTACAGAGGTCCTGGAAAACATCGCCGAGAATCTGGGTCTAAGGTCTAATCAAGAGGCCCTGATAGAGGCTGTAGCCCTTGATAAGTTGAAGGAGAATGCTGAACAACTTGAAAATGCTGTAGAAGTTGAATTTATTGATCAAATGATCTCAGTTGTAAATCGTATGCATGAGCATCTTGTTATGCTTAAGCAAGCTCAGAGCTCTATCCCGGTGTTAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTAGAATTGATGATGGATCCAGTCATTGTGGCATCAGGGCAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGATCTTGGACTTACTGTTTGTCCCAAGACACGTCAGACTCTGGTTCACACCAATCTAATACCTAACTACACTGTCAAGGCACTAATTGCTAACTGGTGTGAATCAAATGATGTGAAGCTCGTTGATCCCATGAAGTCCAAAAGCTTAAATCAGTCATCTCCTTTTCATGGGTCTATGGAGTCTGGTTTGATCAAGGATTTGCCTGAAATCCACCAAGAACGAACATCAACATTGCATTCCTCTTCAACTCCAAGTGGTTCCTTAAATGGCATGGTTAATGAGCAGCATGTGAATCTTGAAAGAATATCATCCACAGGTTCGGATGACGAGTCTGCCAGCTCAGATGAAGGGAGTGTGGATTCAGTTGACCAATCATTAATGTCACCATCTACAAGGGAATCCTCCAATGCCTTAAGCTCAGAACAATCTCAAACTGATGTTAGAACTACTTCTCATAACAATACTCCTCTGCTATCAACCAGTTCAGTCCACAGTCAAGATGCTTCTGGAGAATTGAATTCAGGGCCAGATGCTGTTGCCATGCCAACTCGTCATAGAGAACCTGAGTTTTCACCCCAATTGGCGGTGCCAAGGTCTCGAAGCCAAACTTTATGGCAAAGGTCATCTGAGTGGCTTGTTCCTAGGGTAGTGTCTAATCCTATCGAAACAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTCGGAAATTATTGGAGCAGTTAAAGAGCGATTCTGTTGATTCTAAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGGAAAATATGGATAACCGAATTGTGATCTCAAATTGTGGAGCCATTAGCTTAATAGTTGATTTACTGCAATCAACCGATACTAGGATCCAGGAAAATTCTGTTACAACACTCCTTAACTTATCAATCAATGATAACAACAAAGCTGCTATTGCAAATTCTGGTGCAATTGAACCTTTGATTCATGTCCTTCAGACAGGGAGTCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTATCAGTTACTGAGGAAAACAAGATCAGGATAGGCAGGTCTGGGGCAATTCGACCACTGGTCGATTTATTAGGGAACGGAACGCCTAGAGGGAAGAAAGATGCTGCCACTGCTTTGTTTAACTTGTCATTATTTCATGAAAACAAGGATCGAATTGTGCAAGCCGGTGCTGTGAAAAACCTTGTAGAGTTAATGGACCCGGCAGCCGGAATGGTTGATAAGGCAGTGGCTGTTCTAGCAAATCTTGCTACGATACCAGAAGGGAAAACAGCAATTGGTCAGCAAGGTGGCATTCCTGTTTTGGTTGAAGTTATCGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCAGCGGCTCTTCTACATCTATGCTCAGACAATCACAGATACTTAAACATGGTGCTCCAAGAAGGAGCTGTACCCCCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCTTGGCTCTCCTTAATCAATTTAGAAGCCAAAGACATGGGAGCGCTGGGAGAGCTTGA 2700 0.4241 MWNIVFGVSVWAIWMARSQVIFIDQQWNFDQVVNRAKFVSFEVIQGMGINVYILVSPYERHVRWVSPQSGWVKFNVDDSVRSTTTAAFSSSHSNGGRKTHLSGAASQLFSFLSQSTGNCSLSIPLFGVMEISLLKVLSDAISSFSHLSFSERMKSEPVSKYYQKAEKMLKLLKPIIDTTVFSDLASNKLLSKLFEELSLAVDELRELSLNWHPLSSKFYFVIQVDPLISTIQDLGLSILQQLKASPQSLLDNLRDEASSTIKKAIMEQLEGVGPSTEVLENIAENLGLRSNQEALIEAVALDKLKENAEQLENAVEVEFIDQMISVVNRMHEHLVMLKQAQSSIPVLVPADFCCPLSLELMMDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCESNDVKLVDPMKSKSLNQSSPFHGSMESGLIKDLPEIHQERTSTLHSSSTPSGSLNGMVNEQHVNLERISSTGSDDESASSDEGSVDSVDQSLMSPSTRESSNALSSEQSQTDVRTTSHNNTPLLSTSSVHSQDASGELNSGPDAVAMPTRHREPEFSPQLAVPRSRSQTLWQRSSEWLVPRVVSNPIETRADLSAAETQVRKLLEQLKSDSVDSKREATAELRLLAKENMDNRIVISNCGAISLIVDLLQSTDTRIQENSVTTLLNLSINDNNKAAIANSGAIEPLIHVLQTGSPEAKENSAATLFSLSVTEENKIRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSLFHENKDRIVQAGAVKNLVELMDPAAGMVDKAVAVLANLATIPEGKTAIGQQGGIPVLVEVIELGSARGKENAAAALLHLCSDNHRYLNMVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGSAGRA 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02209 899 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 779 820 IPR000225 GO:0005515
Gma02g02209 899 Coils Coil 291 321 - -
Gma02g02209 899 SMART arm_5 768 807 IPR000225 GO:0005515
Gma02g02209 899 SMART arm_5 727 767 IPR000225 GO:0005515
Gma02g02209 899 SMART arm_5 686 726 IPR000225 GO:0005515
Gma02g02209 899 SMART arm_5 808 848 IPR000225 GO:0005515
Gma02g02209 899 SMART arm_5 645 685 IPR000225 GO:0005515
Gma02g02209 899 SMART arm_5 849 890 IPR000225 GO:0005515
Gma02g02209 899 SUPERFAMILY RING/U-box 339 425 - -
Gma02g02209 899 Gene3D - 690 896 IPR011989 -
Gma02g02209 899 Pfam U-box domain 348 418 IPR003613 GO:0004842|GO:0016567
Gma02g02209 899 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 697 739 IPR000225 GO:0005515
Gma02g02209 899 PANTHER U BOX DOMAIN-CONTAINING 139 895 - -
Gma02g02209 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 422 IPR013083 -
Gma02g02209 899 Gene3D - 601 689 IPR011989 -
Gma02g02209 899 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 139 895 - -
Gma02g02209 899 MobiDBLite consensus disorder prediction 485 583 - -
Gma02g02209 899 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 738 780 IPR000225 GO:0005515
Gma02g02209 899 SUPERFAMILY ARM repeat 615 888 IPR016024 -
Gma02g02209 899 CDD RING-Ubox_PUB 352 394 IPR045210 -
Gma02g02209 899 SMART Ubox_2 351 414 IPR003613 GO:0004842|GO:0016567
Gma02g02209 899 ProSiteProfiles U-box domain profile. 347 421 IPR003613 GO:0004842|GO:0016567
Gma02g02209 899 MobiDBLite consensus disorder prediction 485 554 - -
Gma02g02209 899 Pfam Armadillo/beta-catenin-like repeat 647 684 IPR000225 GO:0005515
Gma02g02209 899 Pfam Armadillo/beta-catenin-like repeat 686 725 IPR000225 GO:0005515
Gma02g02209 899 Pfam Armadillo/beta-catenin-like repeat 728 766 IPR000225 GO:0005515
Gma02g02209 899 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 656 698 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02209 Gma-Chr2 48078017 48087513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02209 308 899 U-box Gene Family AT2G23140 59.346 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02209 - - gmx:100777715 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01988 14 50814315 50817185 Gma02g02209 02 48078017 48087513 GST
Gma18g00516 18 4849706 4853432 Gma02g02209 02 48078017 48087513 PCT
Gma11g01805 11 20621784 20629690 Gma02g02209 02 48078017 48087513 PCT
Gma02g02209 02 48078017 48087513 Gma18g00516 18 4849706 4853432 PCT
Gma02g02209 02 48078017 48087513 Gma11g01805 11 20621784 20629690 PCT