Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02172 ATGCTTCCTAGAAAGAGAGCGAGCGAAGGAGGAGTGGTTGTAGAAGGAGACACTGACCCCACCAACAGTTCCAATAGCGGTGCGGCGTCGTTTTCGAAGAAGGCTCGGATCGGAAGCCTTGCTGCCTGCTCGGGTGCCGGTGCTGCGGAATCGGCGGTCAACGTCAGCGGCCAGGGATTCGGTAGCGGCAGTGGTGACGACAGCGTCGGGAACTCGGTCGGAGGAATGGCGTTGGGGAATTCGCAACCGGCGGAGATCGATGAGGATCTGCACAGTCGGCAGCTCGCTGTGTATGGCCGGGAGACCATGCGGAAGCTCTTTGCGTCCAGCATCCTCGTTTCGGGGATGCAGGGTCTTGGAGTTGAGATTGCCAAGAATCTCATTCTTGCTGGGGTGAAATCTGTAACCTTGCATGATGAAGGAAATGTGGAGTTATGGGATTTGTCCAGTAATTTTGTGTTTTCAGAAAATGATGTTGGCAAGAACAGGGCAGAGGCTTCTGTTGGTAAGTTGCAGGAACTTAACAATGCCGTGGTTGTACTAACCTTAACAACTAAGATGACAAAAGAACAACTTTCTAATTTCCAGGCTGTTGTTTTCACTGAAGTTAGTCTTGAGAAAGCCGTTGAGTTCAATGATTACTGCCACAGTCATCAGCCTCCTATTGCCTTTATTAAAAGTGAAGTTAGGGGCCTTTTTGGTTCTCTGTTTTGTGATTTTGGGCCTGAGTTCACTGTTGTTGATGTCGATGGAGAGGATCCCCATACTGGTATAATTGCATCCATCAGCAATGACAACCCTGCTCTAGTTTCCTGTGTTGATGATGAGAGGCTCGAGTTTCAGGATGGAGATCTGGTTGTATTCTCTGAAGTTCATGGTATGGAAGAGTTGAATGATGGAAAGCCAAGAAAGATAAAAAATGCTAGAGCATATTCATTCACTCTTGAAGAAGACACCACAAATTATGGTAGATATGAAAAAGGTGGCATTGTCACACAGGTCAAACAACCAAAGGTTTTGAACTTTAAACCACTCAGGGAAGCACTCAGTGATCCTGGTGATTTTCTGCTGAGTGATTTTTCGAAGTTTGATCGCCCACCTCTACTGCATTTAGCATTCCAGGCTTTGGATAAGTTCGTTTCTGAGATAGATCGCTTCCCTGTTGCTGGTTCAGAGGATGATGCACAGAAACTTATATCTATTGCCAGTAATATTAATGGTAGCTTAGGTGATGGAAGATTGGAAGATGTGAATCCAAAACTTCTACAGCAATTTGCCTTTGGCGCTAGGGCAGTATTGAATCCTATGGCAGCCATGTTTGGTGGAATTGTAGGACAAGAGGTTGTAAAAGCATGCTCTGGGAAATTTCATCCACTTTTTCAATTTTTGTACTTCGACTCTGTGGAATCACTCCCTACAGAACCACTGGACCCTAATGATTTAAAACCATTAAATAGTCGTTATGATGCACAGATTTCAGTTTTTGGACAAAAGTTACAGAAGAAATTAGAGGATGCTGAAGTTTTTGTTGTTGGATCTGGTGCATTGGGGTGTGAATTTTTGAAAAACCTTGCCCTAATGGGAGTTTCTTGTGGTCAGGGAAAGCTCACAATTACTGATGATGATGTCATAGAAAAGAGTAACCTAAGTAGGCAGTTCCTCTTCCGCGATTGGAATATTGGCCAGGCTAAGTCTACAGTTGCTGCTTCAGCTGCTGCATCTATAAATCCCCGTCTGAATATTGAAGCTCTGCAAAATCGTGTTGGCCCTGAAACTGAAAATGTGTTTCATGATACCTTCTGGGAAAATTTGAGTGTCGTGATTAATGCACTAGACAATGTGAATGCAAGACTGTATGTTGATCAGAGGTGCTTGTATTTCCAGAAGCCACTTCTTGAATCTGGAACTCTTGGGGCCAAATGCAATACCCAAATGGTCATTCCCCACCTAACAGAAAATTATGGCGCATCAAGAGATCCACCTGAGAAACAGGCACCGATGTGTACTGTTCATTCATTTCCACATAACATTGACCACTGCTTGACATGGGCTCGGTCAGAGTTTGAGGGTTTGCTTGAGAAAACTCCAGCTGAAGTAAATGCATATTTATCTAATCCAAATGAATATACTAATGCAATGAGGAATGCTGGCGATGCTCAAGCGAGGGATAACTTGGAGCGTGTTCTTGAGTGTTTGGACAAGGAGAAGTGTGAGACCTTTGAAGATTGTATTACATGGGCTAGGCTAAAGTTTGAAGATTATTTTGCTAACCGAGTAAAGCAATTAATTTATACTTTTCCTGAAGATGCTGCAACTAGTACTGGAGCTCCTTTCTGGTCTGCACCAAAACGGTTCCCTCATCCACTGCAATTCTCATCCTCTGATCTGGGTCATCTTCAGTTTTTGATGGCAGCTTCTATATTACGAGCAGAAACATTTGGTATTCCAATTCCTGACTGGGTGAAGAATCCTAAGAAGTTGGCTGAAGCTGTTGATAGAGTGATAGTACCTGACTTTCAGCCTAAGAAAGATGCAAAAATAGTGACAGATGAGAAGGCCACCAGTCTCTCATCCGCGTCCATAGATGATGCAGCTGTGATTAATGATCTAATCCTCAAGTTAGAGGGGTGCCGGACAAAGCTGCTACCAGAGTTCAGGATGAAACCAGTTCAGTTTGAAAAGGATGATGATACAAACTACCATATGGACCTGATAGCTGGGCTTGCAAACATGAGGGCACGGAACTACAGCATTCCGGAAGTTGACAAGCTCAAGGCCAAGTTTATTGCCGGACGGATCATTCCAGCAATTGCAACATCAACTGCCATGGCCACGGGGCTTGTCTGCCTGGAGCTGTACAAAGCTTTGGATGGAGGGCACAAAGTTGAGGACTACCGAAACACATTTGCCAACTTAGCACTGCCTCTCTTTTCCATGGCAGAGCCAGTTCCGCCAAAGGTTATCAAGCATCAAGATATGAGTTGGACAGTCTGGGACAGATGGATTCTAAAAGACAATCCTACTCTAAGGGAGCTTCTTGAGTGGCTGAAGTCAAAAGGTTTGAATGCTTATAGTATTTCATGTGGAAGTTGTCTGCTCTATAATAGCATGTTCCCTAGGCACAGAGAACGAATGGACAAAAAAATGGTGGATTTAGCTAGGGAAGTGGCCAAGGTGGAAATACCTTCTTACCGTCGTCACTTGGATGTTGTTGTCGCCTGTGAGGATGATGATGATAATGACATTGACATCCCCCAAATATCCATCTATTTCCGTTAG 3279 0.4434 MLPRKRASEGGVVVEGDTDPTNSSNSGAASFSKKARIGSLAACSGAGAAESAVNVSGQGFGSGSGDDSVGNSVGGMALGNSQPAEIDEDLHSRQLAVYGRETMRKLFASSILVSGMQGLGVEIAKNLILAGVKSVTLHDEGNVELWDLSSNFVFSENDVGKNRAEASVGKLQELNNAVVVLTLTTKMTKEQLSNFQAVVFTEVSLEKAVEFNDYCHSHQPPIAFIKSEVRGLFGSLFCDFGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMEELNDGKPRKIKNARAYSFTLEEDTTNYGRYEKGGIVTQVKQPKVLNFKPLREALSDPGDFLLSDFSKFDRPPLLHLAFQALDKFVSEIDRFPVAGSEDDAQKLISIASNINGSLGDGRLEDVNPKLLQQFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFLYFDSVESLPTEPLDPNDLKPLNSRYDAQISVFGQKLQKKLEDAEVFVVGSGALGCEFLKNLALMGVSCGQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAASINPRLNIEALQNRVGPETENVFHDTFWENLSVVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPNEYTNAMRNAGDAQARDNLERVLECLDKEKCETFEDCITWARLKFEDYFANRVKQLIYTFPEDAATSTGAPFWSAPKRFPHPLQFSSSDLGHLQFLMAASILRAETFGIPIPDWVKNPKKLAEAVDRVIVPDFQPKKDAKIVTDEKATSLSSASIDDAAVINDLILKLEGCRTKLLPEFRMKPVQFEKDDDTNYHMDLIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKALDGGHKVEDYRNTFANLALPLFSMAEPVPPKVIKHQDMSWTVWDRWILKDNPTLRELLEWLKSKGLNAYSISCGSCLLYNSMFPRHRERMDKKMVDLAREVAKVEIPSYRRHLDVVVACEDDDDNDIDIPQISIYFR 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02172 1092 Gene3D - 81 199 IPR042449 -
Gma02g02172 1092 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 85 472 IPR035985 GO:0008641
Gma02g02172 1092 Gene3D - 659 934 IPR042063 -
Gma02g02172 1092 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 71 1091 IPR045886 -
Gma02g02172 1092 Gene3D - 253 334 IPR042302 -
Gma02g02172 1092 Gene3D - 508 985 - -
Gma02g02172 1092 TIGRFAM Ube1: ubiquitin-activating enzyme E1 85 1092 IPR018075 -
Gma02g02172 1092 Pfam ThiF family 91 471 IPR000594 -
Gma02g02172 1092 Gene3D - 1000 1090 IPR038252 -
Gma02g02172 1092 CDD Ube1_repeat2 508 1045 - -
Gma02g02172 1092 Pfam Ubiquitin-activating enzyme E1 four-helix bundle 336 406 IPR032420 -
Gma02g02172 1092 SMART UBA_e1_C_a_2 965 1087 IPR018965 -
Gma02g02172 1092 Pfam Ubiquitin-activating enzyme, SCCH domain 674 927 IPR019572 -
Gma02g02172 1092 ProSitePatterns Ubiquitin-activating enzyme signature 1. 450 458 IPR018074 -
Gma02g02172 1092 PRINTS Ubiquitin-activating enzyme E1 signature 227 254 IPR000011 GO:0008641|GO:0036211
Gma02g02172 1092 PRINTS Ubiquitin-activating enzyme E1 signature 112 136 IPR000011 GO:0008641|GO:0036211
Gma02g02172 1092 PRINTS Ubiquitin-activating enzyme E1 signature 581 606 IPR000011 GO:0008641|GO:0036211
Gma02g02172 1092 PRINTS Ubiquitin-activating enzyme E1 signature 735 762 IPR000011 GO:0008641|GO:0036211
Gma02g02172 1092 PRINTS Ubiquitin-activating enzyme E1 signature 534 557 IPR000011 GO:0008641|GO:0036211
Gma02g02172 1092 CDD Ube1_repeat1 90 475 - -
Gma02g02172 1092 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 71 1091 - -
Gma02g02172 1092 Pfam Ubiquitin-activating enzyme E1 FCCH domain 265 335 IPR032418 -
Gma02g02172 1092 Pfam ThiF family 488 982 IPR000594 -
Gma02g02172 1092 Gene3D - 210 498 - -
Gma02g02172 1092 ProSitePatterns Ubiquitin-activating enzyme active site. 666 674 IPR033127 -
Gma02g02172 1092 Pfam Ubiquitin fold domain 998 1087 IPR018965 -
Gma02g02172 1092 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 483 982 IPR035985 GO:0008641
Gma02g02172 1092 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02172 Gma-Chr2 47626480 47632721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02172 63 1092 EF-hand Containing Proteins AT2G30110 82.541 0.0 1787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02172 K03178 - gmx:100811391 2110.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00554 18 5259774 5276362 Gma02g02172 02 47626480 47632721 PCT
Gma11g01860 11 21702725 21710076 Gma02g02172 02 47626480 47632721 PCT
Gma02g02172 02 47626480 47632721 Gma18g00554 18 5259774 5276362 PCT
Gma02g02172 02 47626480 47632721 Gma11g01860 11 21702725 21710076 PCT