Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02170 ATGGCACCATTCACTCCGTCGAAGTTGCTTCTGTTAACTCTGGTTTTCACGTTGAGCCAGAAACAGAGTCTCTGTTCCACGCTCAAGAGCGAAGAAGGTTTGGCGCTGCTGGCGTTGAGGGAGCGAGTGGTGAGTGACCCGCAGGGGGCTTTATCAAGTTGGAGTGGCGAAGATGGAGACATTGATCCTTGCTCGTGGTTCGGTGTGGAGTGTTTTCATGGTTATGTTGTGACCTTGAATTTAAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAATTGGAAAGCTGACTCACATAAAATCAATCATTTTGCGCAACAATTCCTTCTTTGGAGAAATTCCCAAGGAGATACTACACTTAGAAAAATTGGAAGTCCTTGACTTGGGATATAACAACTTTAGTGGATCACTTCCATTTGACCATGGCAGTATGCCATCCCTGACCACTCTTTTATTGGACAACAATTACTATCTTACCAACTTAACTCCAGAGCTGTATAAGCTCAAGATGAATTCTGAATTTCATGCCAATGAAGAACAACTAACTGGTGCCACCACTAGAGAATTATTTGTTTGCAGATGTCATTTACGGCACATTGGCCTACATGGGGATAGATCATACAGGAGGCAACTTCTCAAGGTAGCAAATGATGCTAATACACCTAGAATCCAAGGGAATGTTAACCGAGGGACACTTAAACAATCAGCATCACATTTCGCTTTTTCATTACCCCCAGATTTTGAGCCCTTCTCATCATCACCATCGGAAAGTCCTTCATATTCACCAGGAGCAGCTCCATTATCATATTCGCCTTCGCCATTGCCATCTCCCTCCAGTATTTTTTTCACTCCTTCACCCTCTCCTTCACCTGTAGTGTTACCAACTCCAGGCATATCATCCCCAGCAAACACACTACCACCCGAGTTTAATTGGGCGCCTAGCCCTTCACCATTTTCTAACCAAGGAAACACAGACAGTTCCAATCAAATACATCATTCGGTGATAATCTGGTTTGCAGTTGGGGGCTTCTCCTTATTGATTTTGGTGTCAGCCATTATTTTTGCTTGTTTCCAAAGTAGGAAGGTTGTGGCTGTTAAACCATGGTCCACAGGGTTGAGTGGCCAGCTGCAGAAAGCTTTCGTAAAAGGTGTGCCAAGTCTCAAACGAGGAGAAATTGAAGCAGCTTCTGAATATTTCAGTAACATCATTGGTTCTCTTCCTGATGGAACTGTCTATAAGGGGACTCTCTCCAGTGGAGTTGAGATAGCTGTAGCATCATCTGCAGTGACCACAGCTAAAAACTGGTCAAAAAGTATGGAAGCTCAATTCAGAAAGAAGATTGCGACATTATCTAGGGTGAACCACAAGAATTTTGTGAATCTCATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGCTTGAGTATGCTCCAAATGGAACACTATTTGAGCATCTACACATTAGAGAAGGCGAAGAACTAAATTGGACAATGAGAATGAGGATAGCTATGGGGATAGCCTACTGCCTAGAGTATATGCATGAGCTGAAACCACCCATTGCCCATAGAAACCTGCAATCTTCCTTTATATACCTTACTGAAGATTATGCTGCTAAAATATCAGATCTTAGTTTATGGAATGACATGTGTGATACAAAGAATGGGTCTGCAACCACACAATTCTTGGAAACATCGTCAGCCGATACCAAGGACAATGTTTACAGCTTTGGAATAGTATTGTTTGAGTTGATTACAGGGAGAATTCCCCTTGCTGGGAACAATGAACTTCTGGCAGATTGGGCAGCAGAATATGTAAGGTGGGGGAAATCCTTAAGAGATGTTGTGGATCCAAGGCTGAAGTCTTTGCAGGAAGAAGAGATTGAGGAATGGTCTGAAGTGATAAGAAACTGTGTACAACCAGATCCGGAGAAAAGGCCAACTATGAAAGAAGTTACATCTAGACTCAAGGAAATCACAGCTATGGGGCCTGATGGAGCAAATCCAAAAGCATCACCACTTTGGTGGGCAGAAATGGCAATTACATCCACTGATTCAAGTTGA 2073 0.4293 MAPFTPSKLLLLTLVFTLSQKQSLCSTLKSEEGLALLALRERVVSDPQGALSSWSGEDGDIDPCSWFGVECFHGYVVTLNLKDLCLEGTLAPEIGKLTHIKSIILRNNSFFGEIPKEILHLEKLEVLDLGYNNFSGSLPFDHGSMPSLTTLLLDNNYYLTNLTPELYKLKMNSEFHANEEQLTGATTRELFVCRCHLRHIGLHGDRSYRRQLLKVANDANTPRIQGNVNRGTLKQSASHFAFSLPPDFEPFSSSPSESPSYSPGAAPLSYSPSPLPSPSSIFFTPSPSPSPVVLPTPGISSPANTLPPEFNWAPSPSPFSNQGNTDSSNQIHHSVIIWFAVGGFSLLILVSAIIFACFQSRKVVAVKPWSTGLSGQLQKAFVKGVPSLKRGEIEAASEYFSNIIGSLPDGTVYKGTLSSGVEIAVASSAVTTAKNWSKSMEAQFRKKIATLSRVNHKNFVNLIGYCEENKPFSRMMVLEYAPNGTLFEHLHIREGEELNWTMRMRIAMGIAYCLEYMHELKPPIAHRNLQSSFIYLTEDYAAKISDLSLWNDMCDTKNGSATTQFLETSSADTKDNVYSFGIVLFELITGRIPLAGNNELLADWAAEYVRWGKSLRDVVDPRLKSLQEEEIEEWSEVIRNCVQPDPEKRPTMKEVTSRLKEITAMGPDGANPKASPLWWAEMAITSTDSS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02170 690 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 689 - -
Gma02g02170 690 Gene3D Ribonuclease Inhibitor 29 234 IPR032675 -
Gma02g02170 690 Gene3D Phosphorylase Kinase; domain 1 370 480 - -
Gma02g02170 690 Pfam Protein tyrosine and serine/threonine kinase 403 659 IPR001245 GO:0004672|GO:0006468
Gma02g02170 690 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Gma02g02170 690 ProSiteProfiles Protein kinase domain profile. 398 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g02170 690 SUPERFAMILY L domain-like 41 196 - -
Gma02g02170 690 PANTHER PROTEIN MALE DISCOVERER 2 9 689 - -
Gma02g02170 690 SUPERFAMILY Protein kinase-like (PK-like) 396 659 IPR011009 -
Gma02g02170 690 Gene3D Transferase(Phosphotransferase) domain 1 481 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02170 Gma-Chr2 47595518 47601858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02170 30 662 Receptor kinase-like Gene Family AT1G25320 25.565 3.55e-48 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gma02g02170 PK_Tyr_Ser-Thr 4.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02170 - - gmx:100809790 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00559 18 5340177 5348856 Gma02g02170 02 47595518 47601858 PCT
Gma11g01869 11 22092403 22098714 Gma02g02170 02 47595518 47601858 PCT
Gma02g02170 02 47595518 47601858 Gma18g00559 18 5340177 5348856 PCT
Gma02g02170 02 47595518 47601858 Gma11g01869 11 22092403 22098714 PCT