Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02161 ATGGTTTCGTGGGTGAGAGGCAAGTGCGTCGGTAACGGCGCGTTTGGGGTTGTGAACGTGGCGATTTCGAAAAGAGATAATCGCGTTTTCGCGGTGAAGTCCGTGGATTGTGGAAGGGGGCTTTCTGGTCATCAGGTGGAGGCGTTGGAGAACGAGATTGGGATTCTGAAGCGGGTGGCTTCGCCGCACGTGGTGGCTTATCTCGGAGACGATGTCACGTGCGAAGGAACGGCGTCGTTCAGGAATCTTCATCTGGAGTACATGCCAGgtggcaccgtcgctgacttggaccgcgctgacgtggacGAGCGGTTAGTGAGGCGCTTCGCGTGGTGCCTCGTGTCCGCGCTGCGTGACGTTCACGCGCAAGGCTTCGTCCACTGCGACGTGAAAGGGAGGAACGTGCTTCTCTCCGGCGACGGCGAAATCGTGAAGCTCGCCGATTTTGGCACGGCGGTGGAAATTGAATCCTCGCCGGCGGAGATGTTATTGTTGTCGCGGGGGAGTCCGATGTGGATGGCGCCGGAGGTGGTTCGCCGGCAGAGGCAGGGGCCGGAGTCCGACGTGTGGTCGCTCGGATGCACGGTGATCGAGATTGTCACCGGGAAACCGGCGTGGGAGGATCGCGGCGTCGACACGCTGACTCGAATCGGTTACTCAGACGAGTTGCCGGAATTTCCAAAGCAGTTGTCGGAGCTAGGGAAGGATTTTCTCGAGAAGTGTCTCAGAAGAGAACATAGTGAACGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGCTTCCCTACTACGCGGTTGCTGAATCGTCGCCTCGCTGCGTTCTCGACTGGGTTGACTCGGAGCTCAACTCCGAGTCAGATTGTAACGACCGTGATCATCAAGAAGACGTGTTTATAAAATTTACCAACAGCGAAGAAAAATCAGTTATTAAAAATAGAATTAGTAAATTTGCGACAGAGTCGAGGGTAAATTGGGAAACGCAGGGTTGGATAGTGGTGAGGGAAATTGAGTCCAACGGAAAACCAACGACAACGGGAACAGAAACAGAAATAGAGGAAGGAGCATGTACGTGTGAGTGTGATGGTGTTGGTTCGAGCAAAGAAGGGGTAAATTGGGAGTTTCACAATGTGGCGGGGACTGGTATGGAATATTCGGATTCTGTAGGGGTAAATCGGGGAATAGGAAAGTTGGGTGGGAGTAACACCGCTGGAGGGGGTGGTGGTTGGAGCTGTCGGCAGGACAAGGTCACAAGAAGCATGCCTCATGGTCATGCCTACGCCGCAATAACACTTTTTGCTTTGGGCCAACAATTGCATATGGCAAATGGATAG 1335 0.5221 MVSWVRGKCVGNGAFGVVNVAISKRDNRVFAVKSVDCGRGLSGHQVEALENEIGILKRVASPHVVAYLGDDVTCEGTASFRNLHLEYMPGGTVADLDRADVDERLVRRFAWCLVSALRDVHAQGFVHCDVKGRNVLLSGDGEIVKLADFGTAVEIESSPAEMLLLSRGSPMWMAPEVVRRQRQGPESDVWSLGCTVIEIVTGKPAWEDRGVDTLTRIGYSDELPEFPKQLSELGKDFLEKCLRREHSERWSCDQLLQHPFLLPYYAVAESSPRCVLDWVDSELNSESDCNDRDHQEDVFIKFTNSEEKSVIKNRISKFATESRVNWETQGWIVVREIESNGKPTTTGTETEIEEGACTCECDGVGSSKEGVNWEFHNVAGTGMEYSDSVGVNRGIGKLGGSNTAGGGGGWSCRQDKVTRSMPHGHAYAAITLFALGQQLHMANG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02161 444 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 361 - -
Gma02g02161 444 Gene3D Transferase(Phosphotransferase) domain 1 3 330 - -
Gma02g02161 444 ProSiteProfiles Protein kinase domain profile. 4 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g02161 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gma02g02161 444 CDD STKc_MAPKKK 3 261 - -
Gma02g02161 444 SMART serkin_6 4 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g02161 444 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g02161 444 SUPERFAMILY Protein kinase-like (PK-like) 4 317 IPR011009 -
Gma02g02161 444 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gma02g02161 444 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02161 Gma-Chr2 47467272 47471932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02161 4 336 MAP Kinase Kinase Kinase AT2G30040 57.270 3.22e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma02g02161 Pkinase 3.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02161 - - gmx:100807131 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01938 14 50154092 50155690 Gma02g02161 02 47467272 47471932 GST
Gma18g00572 18 5541056 5547513 Gma02g02161 02 47467272 47471932 PCT
Gma11g01903 11 23999680 24002127 Gma02g02161 02 47467272 47471932 PCT
Gma02g02161 02 47467272 47471932 Gma18g00572 18 5541056 5547513 PCT
Gma02g02161 02 47467272 47471932 Gma11g01903 11 23999680 24002127 PCT