Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02143 ATGCACATGAACACCTACTCGGAAGCCACCACATCACAATTACCAATACCACCAACCATGGACGAAGATTTGGAGAATAACACGGAGGTTTGTGACGGTAACAATGCAATGACACCAATGGTGAGAAAGAAGTCAGAACTAGTTGTGGTCGCAAATAATAACTCTCGTTTACAAATGCTTAGGAATTTCATGACCAATTTGCAAGAGGTCTTCTTCGGCACTAAGCTTGTGGTGCTTTTTCCGGCAGTCCCTTTGGCTGTTGTTGCAAATTTTTATAGCTTTGGAAGGCCTTGGATTTTTGCTTTCAGCCTACTTGGACTTGCTCCGCTAGCTGAACGAGTTAGCTTCCTGACTGAGCAAATTGCATATTTCACCGGCCCAACAGTTGGAGGGCTTCTGAATGCAACATGTGGAAATGCAACCGAAATGATCATAGCATTGTTAGCACTTCACCAGAACAAAGTTCATGTTGTGAAGTTGTCCCTGCTGGGTTCCATTCTCTCAAACCTTCTCTTGGTTCTTGGAAGTTCACTCCTCTGTGGTGGTTTAGCCAATCTTAAGAGAGAACAAAGATATGACAGAAAACAGGCTGATGTAAATTCACTGCTTTTGTTGCTGGGGTTGTTGTGCCATTTGCTGCCATTGCTGTTCAAATACGCCTTAGGAGGAGGCGATCATTCTATAGCCACTAGCACTCTTCAGTTGTCAAGAGCAAGCAGCGTTGTTATGCTTCTAGCATACGCTGCTTACATCTTCTTCCAATTGAAAACCCATCGTAAATTGTTTGATGCACAAGAGGTGGACGATGATGAAGAGAAGGCAGTTATAGGATTTTGGAGTGCATTTACGTGGTTGGTGGGTATGACATTGGTCATATCTCTGCTTTCTGAATATGTTGTGGGAACTATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTAAGCTTCATTAGCATAATTTTGCTGCCAATTGTTGGAAATGCCGCAGAACATGCTGGTTCAATCATATTTGCTTACAAGAACAAGTTGgacatatcgttgggtgttgctatgggatctgcaactcaaatttctatgtttgtggttccattaagtgtagttgttgcatggataatgggtataagaatggatttggacttcagtcttcttgaaactggatgtcttgcttttacaattataattacagcgttcactttacaggatggaacttcacactacatgaaaggagtgattcttactctctgttacattgtcattggagcatgtttttttgttctcaaaactcctctaattgggcaatctcctaaggccagttttggagttaaaccatcctttgaagccatcaccacttaa 1353 0.3274 MHMNTYSEATTSQLPIPPTMDEDLENNTEVCDGNNAMTPMVRKKSELVVVANNNSRLQMLRNFMTNLQEVFFGTKLVVLFPAVPLAVVANFYSFGRPWIFAFSLLGLAPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATEMIIALLALHQNKVHVVKLSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLLLLLGLLCHLLPLLFKYALGGGDHSIATSTLQLSRASSVVMLLAYAAYIFFQLKTHRKLFDAQEVDDDEEKAVIGFWSAFTWLVGMTLVISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVVVAWIMGIRMDLDFSLLETGCLAFTIIITAFTLQDGTSHYMKGVILTLCYIVIGACFFVLKTPLIGQSPKASFGVKPSFEAITT 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02143 450 TIGRFAM cax: calcium/proton exchanger 81 424 IPR004798 GO:0006816|GO:0015369
Gma02g02143 450 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 434 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gma02g02143 450 TIGRFAM caca2: calcium/proton exchanger 62 424 - -
Gma02g02143 450 PANTHER VACUOLAR CATION/PROTON EXCHANGER 24 434 - -
Gma02g02143 450 MobiDBLite consensus disorder prediction 1 21 - -
Gma02g02143 450 MobiDBLite consensus disorder prediction 1 17 - -
Gma02g02143 450 Gene3D - 127 424 IPR044880 -
Gma02g02143 450 Pfam Sodium/calcium exchanger protein 98 255 IPR004837 GO:0016021|GO:0055085
Gma02g02143 450 Pfam Sodium/calcium exchanger protein 281 419 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02143 Gma-Chr2 47215857 47221376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02143 34 429 Antiporters AT2G38170 67.079 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02143 K07300 - gmx:100802344 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01921 14 49888162 49892964 Gma02g02143 02 47215857 47221376 GST
Gma18g00594 18 5847360 5852236 Gma02g02143 02 47215857 47221376 PCT
Gma11g01967 11 28783296 28787123 Gma02g02143 02 47215857 47221376 PCT
Gma02g02143 02 47215857 47221376 Gma18g00594 18 5847360 5852236 PCT
Gma02g02143 02 47215857 47221376 Gma11g01967 11 28783296 28787123 PCT