Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02117 ATGGGCCTTTCAAGTCTCCCAGCACCATCTGAAGGAGTATTATGTGTCCTTCTGGTGAACACTGTATTGTCAATTTCAATATTCAAAGGCATTGTTAGGACAATCCTACACATTGTTGGCATCCATCTTTCATCATCATCCTCCACTTCACCCTCTTCACCGGATCCCTCGCTAACCGCACCTGAGTCATTTGAATTCCATCTTAGTCCCTCTGAGAGTTACATTGAAGAGTTCAGAAGCCGGACGCCAACACTTCGGTTCGACAGTGTGTGCTGCTGTAAACAACCTGAGCATGACTGCTCTGTATGCCTCACTCAGTTTGAACCGGAATCGGAGATAAACCGCTTATCGTGCGGCCATCTCTTCCACAAAGTGTGCTTAGAGAAGTGGCTGGACTACTGGAACATTACATGCCCTCTTTGCAGGACTCCCTTGATGCCTGAAGATGACACACCTTGCTTTCAGTAA 468 0.4701 MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSSTSPSSPDPSLTAPESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKQPEHDCSVCLTQFEPESEINRLSCGHLFHKVCLEKWLDYWNITCPLCRTPLMPEDDTPCFQ 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02117 155 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Gma02g02117 155 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 153 - -
Gma02g02117 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 150 IPR013083 -
Gma02g02117 155 SUPERFAMILY RING/U-box 99 148 - -
Gma02g02117 155 Pfam Ring finger domain 99 142 IPR001841 -
Gma02g02117 155 SMART ring_2 100 141 IPR001841 -
Gma02g02117 155 PANTHER - 1 153 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02117 Gma-Chr2 47014062 47015861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02117 1 149 C3H Transcription Factor Family AT2G04240 66.234 2.42e-61 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02117 K16285 - gmx:100786803 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01891 14 49610365 49612315 Gma02g02117 02 47014062 47015861 GST