LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma02g02086	ATGGGGCGAAGACCCGCGAGGTGTTATAGGCAAATTAAGAACAAACCATACCCCAAGTCACGGTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTACGATGTTGGTATGAAGAAGAAGGGTGTTGATGAATTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAGAAGGAAAACGTTTCTAGTGAGGCCCTGGAAGCTGCTCGTATTGCTTGCAACAAGTACATGGCCAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGGGTGCACCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCGTGTGCCGGAGCTGATAGGCTCCAAACTGGAATGAGAGGTGCTTTTGGAAAGCCACAGGGTACTTGTGCTAGAGTGGCTATTGGACAGGTCCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCCCAGGAGGCCCTTCGCCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTGTTAGCAGGAAATGGGGCTTCACCAAGTTTAGCCGTTCTGATTATCTCAAGTTCAAGTCAGAGAATAGAATTGTGCCCGATGGTGTGAATGCTAAGCTTCTTGGTTGCCATGGACCATTGGCCAACCGTGAACCCGGAAGGGCCTTTTTGGATACTGCTACTGGTTCTTAG	669	0.4843	MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRIVPDGVNAKLLGCHGPLANREPGRAFLDTATGS	222

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma02g02086	222	Gene3D	Ribosomal protein L10e/L16	1	216	IPR036920	GO:0003735\|GO:0005840\|GO:0006412
	Gma02g02086	222	CDD	Ribosomal_L16_L10e	41	166	IPR016180	GO:0003735\|GO:0005840\|GO:0006412
	Gma02g02086	222	PANTHER	60S RIBOSOMAL PROTEIN L10	1	218	IPR001197	GO:0003735\|GO:0005840\|GO:0006412
	Gma02g02086	222	PIRSF	RPL10a_RPL10e	1	182	IPR001197	GO:0003735\|GO:0005840\|GO:0006412
	Gma02g02086	222	ProSitePatterns	Ribosomal protein L10e signature.	108	129	IPR018255	GO:0003735\|GO:0005840\|GO:0006412
	Gma02g02086	222	TIGRFAM	uL16_euk_arch: ribosomal protein uL16	1	174	IPR001197	GO:0003735\|GO:0005840\|GO:0006412
	Gma02g02086	222	PANTHER	60S RIBOSOMAL PROTEIN L10-LIKE	1	218	-	-
	Gma02g02086	222	Pfam	Ribosomal protein L16p/L10e	12	166	IPR016180	GO:0003735\|GO:0005840\|GO:0006412
	Gma02g02086	222	SUPERFAMILY	Ribosomal protein L16p/L10e	4	173	IPR036920	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma02g02086	Gma-Chr2	46674397	46676770	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma02g02086	1	220	Cytoplasmic Ribosomal Protein Gene Family	AT1G66580	85.909	8.84e-144	398

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma02g02086	K02866		-	gmx:100777196	461.455

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma02g02086	02	46674397	46676770	Gma04g02149	04	51976313	51978864	PCT
	Gma04g02149	04	51976313	51978864	Gma02g02086	02	46674397	46676770	PCT