Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02055 ATGGGGAGAGGTAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATCTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCAGTAATGGACCGATACAGCAAATCAAAAGAAGAACCTTGTCAACTTGGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGCAGGAAAATGATGGGGGAAGAACTGTCAGGCTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCATGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGGTGAAATACAAGAGCTAAATCGAAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTTGTCAAGAAAACATGGAATTGAAAAAGAAGGTAGTCTATGGAACACAAGATGATAACGAAACAAACAGAGATTCTGTTCTGACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAGCAACAACACTACAAGGCATCTTCAGGAACTACAAAATTGGGATTGCAATTGCATTGA 732 0.4235 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVMDRYSKSKEEPCQLGSSASEIKFWQREAAMLRQQLHNLQESHRRKMMGEELSGLTVKELQNLENQLEISLHGVRMKKDQLLMGEIQELNRKGNLIHQENVELYKKVNLICQENMELKKKVVYGTQDDNETNRDSVLTNGLGIGEDLQVPVNLQLSQPQQQQQHYKASSGTTKLGLQLH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02055 243 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Gma02g02055 243 MobiDBLite consensus disorder prediction 222 243 - -
Gma02g02055 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma02g02055 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma02g02055 243 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma02g02055 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma02g02055 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma02g02055 243 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gma02g02055 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 243 - -
Gma02g02055 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 243 - -
Gma02g02055 243 Coils Coil 86 106 - -
Gma02g02055 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma02g02055 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma02g02055 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma02g02055 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Gma02g02055 243 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02055 Gma-Chr2 46214757 46237604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02055 1 235 MADS-box Gene Family AT2G22630 59.751 1.84e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma02g02055 K-box 5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02055 K09264 - gmx:100812413 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02055 02 46214757 46237604 Gma02g02055 02 46214757 46237604 ECH
Gma14g01828 14 48803336 48827541 Gma02g02055 02 46214757 46237604 GST