Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02052 ATGGCCTCACAAGCAGTGCAATTGCGTGTTGAAGACAGTCAAGTGGTTATGGATAATGGCATACTGCAAGTGTATTTATCAAATCCAGGTGGATTTGTTACTGGAATACAATATAATGGCATTGATAATCTGCTTGAAACTCTTAACGAGAAGGATAATAGAGGGTATTGGGACGTTGTTTGGAGTGAAGCCGGAAGTACGGGAACAACTGGGACATTTGAACGGATTGTAGGAACAAGTTTTAATGTTATAATGGAAAACGAGGAACAGGTTGAAATCTCATTCACAAGAAAGTGGGATCCATCTCTGAAGGGAAAGAGAGCACCTCTAAATATTGACAAAAGGTATGTGATGCTTCGTAATTCCGCAGGATTCTACTCGTACGCCATCTTTGAACACTTACAAGAGTGGCCTGCTTTCAACATACCTCAAATAAGGATTGTTTACAAGCTACGAAAAGACAAGTTTCATTATATGGCCGTGTCGGATGATAGACAAAGATTTATGCCTCTCCCGGACGACAGATTACCGGGAAGAGGAAAAGAACTAGTTCCGCCGGAGGCAGTTTTGCTCGTTAATCCAGTGGAACCAGACTTTAAGGGAGAGgtggatgacaagtaccaatattcaagtgagaacaaagatctaatggttcatgggtggATAAGTTCGCAATCCGAAGATGATCCAGCCATGGGGTTATGGGTAATCTTACCCAGCAATGAGTTTCGATCAGGTGGCCTACTTAAACAGAACCTTACTTCCCACGTAGGCCCAATAAGCCTGGCGATGTTTCTTAGTGCTCACTACGCAGGAGAGGATATAGTTTTGAAACTCCAGCCTAATGAACCCTGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTCAACAGTTTGTTAAATGGCGATGACCCGTTAGAGCTCTGGGAGGACGCCAAAAATCAGATGAAGGAGGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCAAAAGTCTAGCCAGCGGGGGAGTTTGTGTGGCACATTACTAGTTCGAGACAGGTGTGTAAGTGACGAGAACATAATAGCAGAAGGCGCATACGTAGGGCTGGCAACACCAGGAGAAGCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAGAGCAAACGAGGAAGGGTACTTCTCAATCGATAATATACGCAGTGGGGATTACAATCTCTATGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAATAATGTTGTCCTCACCATAACACCAGGTTGTGAAATAAACCTTGGTGACATTATTTTTGAGCCACCAAGAGATGGCCCAACATTATGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGGATTCTATGTTCCTGATCCTAATCCCAAATACATTAACAAGCTCTTTGTCAACCATCCAGACAACAAGTTTAGGCAATATGGTTTGTGGGAAAGATATGCAGAGTTATACCCAAATGAAGATTTAATTTATACAGTGGGTGTCAGTGACTACACAAAAGATTGGTTCTTTGCACATGTCCCCAGGAAGCAAGAAGATGGCAGTTACCAAGGAACTACTTGGCAAATTAAGTTCAACCTCGATGACGTGGAGGCAAGTAACATCTACAGATTAAGATTGGCACTTGCAAGTGCAAATATCTCTGAATTACAGGTTAGAGTGAATGATCCAAAACAAGATCCTCCTCTGTTCACTACGGGAGTGATTGGGAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTACTGGCTATTCAGCATTGATGTGCCTGGTCTTCTGCTAGAGAAAAGCGTTAATATTATATTTCTAACACAAACTATGGCTAGTGGCCCCTTGGCCCTCTTCCAGGGGATAATGTATGACTATATTCGTCTAGAAGGTCCTAACCCTTTTCCTCACCAAAAAATACATTAA 1956 0.4146 MASQAVQLRVEDSQVVMDNGILQVYLSNPGGFVTGIQYNGIDNLLETLNEKDNRGYWDVVWSEAGSTGTTGTFERIVGTSFNVIMENEEQVEISFTRKWDPSLKGKRAPLNIDKRYVMLRNSAGFYSYAIFEHLQEWPAFNIPQIRIVYKLRKDKFHYMAVSDDRQRFMPLPDDRLPGRGKELVPPEAVLLVNPVEPDFKGEVDDKYQYSSENKDLMVHGWISSQSEDDPAMGLWVILPSNEFRSGGLLKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNSLLNGDDPLELWEDAKNQMKEEVQSWPYDFPASEDFQKSSQRGSLCGTLLVRDRCVSDENIIAEGAYVGLATPGEAGSWQRECKGYQFWTRANEEGYFSIDNIRSGDYNLYAWVPGFIGEYWNNVVLTITPGCEINLGDIIFEPPRDGPTLWEIGIPDRSAAGFYVPDPNPKYINKLFVNHPDNKFRQYGLWERYAELYPNEDLIYTVGVSDYTKDWFFAHVPRKQEDGSYQGTTWQIKFNLDDVEASNIYRLRLALASANISELQVRVNDPKQDPPLFTTGVIGKDNAIARHGIHGLYWLFSIDVPGLLLEKSVNIIFLTQTMASGPLALFQGIMYDYIRLEGPNPFPHQKIH 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02052 651 PANTHER LG27/30-LIKE GENE 1 646 - -
Gma02g02052 651 Gene3D - 445 640 - -
Gma02g02052 651 CDD RGL4_N 8 305 - -
Gma02g02052 651 SUPERFAMILY Starch-binding domain-like 337 433 IPR013784 GO:0030246
Gma02g02052 651 Gene3D - 335 433 - -
Gma02g02052 651 Gene3D - 5 278 IPR014718 GO:0030246
Gma02g02052 651 Pfam Polysaccharide lyase family 4, domain III 447 639 IPR029411 -
Gma02g02052 651 Pfam Polysaccharide lyase family 4, domain II 361 434 IPR029413 -
Gma02g02052 651 CDD RGL4_C 449 640 - -
Gma02g02052 651 CDD RGL4_M 338 437 IPR029413 -
Gma02g02052 651 Pfam Rhamnogalacturonate lyase family 3 203 IPR010325 -
Gma02g02052 651 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 646 - -
Gma02g02052 651 SUPERFAMILY Galactose-binding domain-like 444 640 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02052 Gma-Chr2 46170413 46176365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02052 1 643 Polysaccharide Lyase AT1G09890 63.509 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02052 K18195 - gmx:100815677 1355.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02052 02 46170413 46176365 Gma02g02052 02 46170413 46176365 ECH
Gma14g01826 14 48759737 48771163 Gma02g02052 02 46170413 46176365 GST