Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02028 ATGCTTCCGTTTCGGAGATTCTATGGGTTCGAGAGCTGGCTAGACCACGACGCTGGCCATGCTCAGAGTTCGCTGATCAAAAAGGCGGTGGAGTTGGACGGCGCCAGATCGAAAACGGAGCGGAAATCAACGGAAGCGTGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCAGGCAGAGAATCAACTCTCACCTCTCCACCTTACGTACCCTCCTTCCTAACGCCGCCAAGTCGGACAAGGCGTCGTTGCTGGGGGAAGTGGTGGAGCACGTGAAGCGGCTGAGGAAGCAAGCCGATGACGTGACGTGCGGGGACTCGTACTCCTCGCGCAGCGGCGAACCGGGTTCGGTCCGGTCGGAGGCATGGCCGTTTCCGGGGGAGTGCGATGAGGTGACGGTGAGTTACTGTGACGGCGAGGACGGGGAACCGAAGCGGGTGAAGGCGACGGTGTGCTGCGGGGACCGGACCGGTCTGAACCGGGACGTGTCCCAAGCGATCCGGTCGGTTCGGGCCAAAGCGGTTCGCGCGGAGATGATGACGGTTGGGGGAAGGACGAAGAGTGTTGTGGTGGTGGAGTGGGAAAAGGAAGAAGAGGAGGTTGGGGCGCTGGAACGGGCTTTGAAGGCTGTGGTGGAGAATCGGGCTTTGGTGGGCTTTGGAATGGGCCCAGTCATTCTGGGCCAGAAACGGGGTAGGGATTGCTGTGCTTCGCCTAGTAGTGAGGTTGACTCTGACTTCTTGCTGAGGAATGGGAGCTTTTGCTAA 765 0.6 MLPFRRFYGFESWLDHDAGHAQSSLIKKAVELDGARSKTERKSTEACKSHREAERRRRQRINSHLSTLRTLLPNAAKSDKASLLGEVVEHVKRLRKQADDVTCGDSYSSRSGEPGSVRSEAWPFPGECDEVTVSYCDGEDGEPKRVKATVCCGDRTGLNRDVSQAIRSVRAKAVRAEMMTVGGRTKSVVVVEWEKEEEEVGALERALKAVVENRALVGFGMGPVILGQKRGRDCCASPSSEVDSDFLLRNGSFC 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02028 254 PANTHER OS09G0463900 PROTEIN 22 232 - -
Gma02g02028 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 102 IPR036638 GO:0046983
Gma02g02028 254 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Gma02g02028 254 PANTHER TRANSCRIPTION FACTOR BHLH30 22 232 IPR045847 GO:0003700|GO:0006355
Gma02g02028 254 MobiDBLite consensus disorder prediction 102 121 - -
Gma02g02028 254 Gene3D - 38 102 IPR036638 GO:0046983
Gma02g02028 254 MobiDBLite consensus disorder prediction 36 60 - -
Gma02g02028 254 SUPERFAMILY ACT-like 146 212 IPR045865 -
Gma02g02028 254 Gene3D - 143 216 - -
Gma02g02028 254 SMART finulus 51 100 IPR011598 GO:0046983
Gma02g02028 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02028 Gma-Chr2 45852668 45853994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02028 34 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 37.681 9.90e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g02028 HLH 6.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02028 - - gmx:100816394 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02028 02 45852668 45853994 Gma02g02028 02 45852668 45853994 ECH
Gma14g01809 14 48496420 48497262 Gma02g02028 02 45852668 45853994 GST