Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01999 ATGGGCATCCACACGGATTGCCGTGCACCACTGTTGATGAATTTGGATCATGATCATGTTTGTTTTCTTCTTCTTATTCTTCTCGTGCCGTCCATCACGGCTCAGTTACAAAACTCGCCGCCACCGCCACCGCCATCGTCGGATCCTTTCACGAGCTTAAGGTTCGACAAGACCATGGCTGCGGTTTTGGTCATCCTGGTAGTTGTTTTTTTTGCATTGGGATTTGTTTCTATATACACGCGCCAATGCGCGGAGCGGAGGATCAGAGGGAGGCTCGACCTCGCCGTGGAGATCGCCGCCGGGATGGAGCGCCGGCAGCCCCGCGGCCTCGACGCGGCGGTGGTGGACACGTTCCCGACCTTCGTGTACTCCGAGGTTAAGGCGCTGAAGATCGGAAGGGTGACGACGCTGGAATGCGCCGTGTGCCTCAACGAGTTCCTCGATGACGAAACGCTGCGTTTGATTCCCAAGTGCTGCCACGTGTTCCACCCCGATTGCATCGACGCGTGGCTGGTGAACCACTCTACTTGTCCCGTTTGCCGCGCCAACCTCGCTCCAAAGCCCGAGGACGCGCCTTCTTCTGTTGAGATTCATGTTCCAGATCCGGCCCGGCCCATTGGGCCCAATGACATCAACCGGGTGGAAGAAGAGCATGAAGGTGAACAAAACAGAATTGTTACGGAGCCGCCACGTGTTTTAGATGATCTTAACCGGGCTCGACCGGTTCGGTCTAAATCGACCGGGATTGGAAATGCGAGACTGTTTCCGCGATCTCTCTCGACGGGTCACTCGCTGGTTCGACCGGGTGATGATTGCGAGCGGTTCACACTGCGGTTACCGGAGGAGGTGAAGGACCGGCTCGTGAGATCGGCGACGCTGAACCGGACGAAGAGTTGTGGGGTGACGTGGCAGCGGCAGAGCAGTGGGAGGAGGGGTTACCGGACGAGGAGTGTGGGGCGGTACGAGCGGTTCGGTGGGGAGGGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACCGTTTTGGGGTAGGACTGGTTCGGTGAAGTCACCTAAGCCTACGAGGGTGAAGGATGAAGTTGACGTGGGAGAACGTTCCTCTGATCGTTTGTTTTCCAAGGATTGA 1125 0.5769 MGIHTDCRAPLLMNLDHDHVCFLLLILLVPSITAQLQNSPPPPPPSSDPFTSLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVEIAAGMERRQPRGLDAAVVDTFPTFVYSEVKALKIGRVTTLECAVCLNEFLDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLAPKPEDAPSSVEIHVPDPARPIGPNDINRVEEEHEGEQNRIVTEPPRVLDDLNRARPVRSKSTGIGNARLFPRSLSTGHSLVRPGDDCERFTLRLPEEVKDRLVRSATLNRTKSCGVTWQRQSSGRRGYRTRSVGRYERFGGEGRLDRWGFMWTPPFWGRTGSVKSPKPTRVKDEVDVGERSSDRLFSKD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01999 374 Pfam Ring finger domain 138 181 IPR001841 -
Gma02g01999 374 MobiDBLite consensus disorder prediction 347 374 - -
Gma02g01999 374 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Gma02g01999 374 CDD RING-H2_PA-TM-RING 138 181 - -
Gma02g01999 374 SMART ring_2 139 180 IPR001841 -
Gma02g01999 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 187 IPR013083 -
Gma02g01999 374 PANTHER RING FINGER DOMAIN-CONTAINING 21 307 - -
Gma02g01999 374 MobiDBLite consensus disorder prediction 351 374 - -
Gma02g01999 374 PANTHER RING-H2 FINGER PROTEIN ATL11 21 307 - -
Gma02g01999 374 SUPERFAMILY RING/U-box 126 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01999 Gma-Chr2 45448221 45449345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01999 18 365 Rapid Response to Elicitors AT3G05200 40.633 3.01e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01999 K10664 - gmx:100807828 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01999 02 45448221 45449345 Gma02g01999 02 45448221 45449345 ECH
Gma14g01780 14 47934137 47935276 Gma02g01999 02 45448221 45449345 GST
Gma02g01999 02 45448221 45449345 Gma04g02179 04 52231260 52231963 PCT
Gma02g01999 02 45448221 45449345 Gma06g00888 06 8199024 8200644 PCT
Gma04g02179 04 52231260 52231963 Gma02g01999 02 45448221 45449345 PCT
Gma06g00888 06 8199024 8200644 Gma02g01999 02 45448221 45449345 PCT