Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01998 ATGAACATGCATAAGGAGAGTCCTCTTATCAAACTCCACAGTTTCGACCAAGGCCATGCATGGCTGGCTCTATTGCACCTTCTCATTCACGTCTCACCGGCAGTAACCGGTCAACCGGTAACCCCGCCGGTGCAACCCGACAGCAACAAATCCATGGTCACAATCATGGCCGTTTTGGCCATCATGTTTCTCATCTCAGTCTTCCTCTCCATTTACTCCCGCAAGTGCTACGACCGGCAGGCCCCGACACGTGGCATCCTCGACCGCGCGGACCCCACCGGCGCAGCCGGTAACCCGTCGCAAGCTGAATCCAATGGCCTCAACCAAGCCACAATAGAAACGTTCCCAAGTTTCCTCTACGGCGACGTGAAGGGTCTGAAAATCGGAAAAGACACGCTTGCATGCGCGGTTTGCTTGAACGAGTTCGAAGACGACGAGACCCTCCGCATGATCCCCAAATGCTGCCACGTGTACCACCGCTATTGCATTGATGAGTGGTTAGGTTCTCACTCCACGTGCCCGGTGTGTCGCGCCAACCTCGTTCCACAACCAGAAGACGTAAACATCAACACGAATATCCCTTCAATCCTGTCAATTCAGATACCCGATGAACACGAACATGAATATGAATACGAGACTGTTGTTGTTGGTGAGGAACATAAGAGAGGTAATGACGTGGAATCACCGAAGGTGGATTTGCTTCGGAGGATTCGCTCGTTGAATCATCAGAGCCGTCCATCGAGGTCGAGGTCGACGGGGTTCTTGTCTTCGCTTTTGTTTTCGAGATCAAACTCGTTGGGGCAAATGCAATTGGCGCATAATGCCGCTGGAGAGAATTATGAGAGGTTTACGCTAAGGTTACCCGAGGAGGTACGGAGCCAGATGATGCTGCAGCGTGCGAATAGCTGCGTGTGCTTTACGAGGATGAGCAGTGGCACGTGGGGGTATAGGACGACGAGAAGCGCGGGGAGAGGGTGTGTACAGTACGAGAGATTTGGTGGTGGTGATGATGAACGGTGGGGTTTCACTTTGACTCCACCGAGTCTCATTAGGAACGGTTGGAATAATAATAGATCAACGAGAAAATCACAGCGTTCGGGTCTGGTGTTGGATAATAATAATGCTGATGAGAAATCCTCTGAATTCTTGCCTCTTGGGTAG 1161 0.5159 MNMHKESPLIKLHSFDQGHAWLALLHLLIHVSPAVTGQPVTPPVQPDSNKSMVTIMAVLAIMFLISVFLSIYSRKCYDRQAPTRGILDRADPTGAAGNPSQAESNGLNQATIETFPSFLYGDVKGLKIGKDTLACAVCLNEFEDDETLRMIPKCCHVYHRYCIDEWLGSHSTCPVCRANLVPQPEDVNINTNIPSILSIQIPDEHEHEYEYETVVVGEEHKRGNDVESPKVDLLRRIRSLNHQSRPSRSRSTGFLSSLLFSRSNSLGQMQLAHNAAGENYERFTLRLPEEVRSQMMLQRANSCVCFTRMSSGTWGYRTTRSAGRGCVQYERFGGGDDERWGFTLTPPSLIRNGWNNNRSTRKSQRSGLVLDNNNADEKSSEFLPLG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01998 386 CDD RING-H2_EL5_like 135 177 - -
Gma02g01998 386 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Gma02g01998 386 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 324 - -
Gma02g01998 386 SUPERFAMILY RING/U-box 131 188 - -
Gma02g01998 386 MobiDBLite consensus disorder prediction 87 106 - -
Gma02g01998 386 PANTHER RING FINGER DOMAIN-CONTAINING 1 324 - -
Gma02g01998 386 MobiDBLite consensus disorder prediction 353 373 - -
Gma02g01998 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 182 IPR013083 -
Gma02g01998 386 SMART ring_2 135 176 IPR001841 -
Gma02g01998 386 Pfam Ring finger domain 134 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01998 Gma-Chr2 45432939 45434290 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01998 22 352 Rapid Response to Elicitors AT3G05200 36.919 1.05e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01998 K10664 - gmx:100807292 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01777 14 47888586 47889764 Gma02g01998 02 45432939 45434290 GST