Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01997 ATGGCCCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACTTACGGTTGCAACAACAAAGACTTCTTGTACTCGTTAGTAGGAGGTGATGGTGGTGGTGGAGGAGGAAGCCACGAGTACGGTTTCCAAGCATCATCAGAAGACAAACCCCATGTGGGAATCATTATCAACAACAACAACATAGACCACACCCTGCATGCAAATTGGGATTCATCTTCTCCTTCGGTGTTGCAAAGTGTCAAAGAACAATGGGATTCACACTCCTCCCCTGAAGCTTGCACTGTTGATCAATCCCTCCCCAGAGCCTTCCCTCTTCCTCCTTCTTCTTCATCCCCCGAAGCCGCCGCCACCGGCCGCCGCAAACGACGTCGTACCAAGAGCGCCAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACCCACATTGCAGTTGAGCGCAATAGAAGGAAGCAGATGAACGAGTACCTTGCCGTGCTTAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCCTCTATTATTGGTGGCACCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGCCAGAAGAAGAGAACAAAGGAGGGTAGTGGCTTCTCTGACTCTTCACCCTTTTCTGAGTTCTTCATGTTCCCCCAGTACTCGACACGTGCCACACAGAGCAGCAGCAGCAGCAGCAGCAAAGGCTACCCTGGCACGTGCGAGGCCAATAACAACATGGCACGGAACCCTTCATCATGGGCCGTGGCGGACATAGAAGTGACCTTGGTGGATGGCCATGCCAACATGAAGATACTCTGCAAGAAACGACCAGGGATGCTTTTGAAGATGGTTGTTGGTCTTTTAAGTCTTGGTCTCAGCATTCTCCACCTTAATGTTACCACTGTTGACGATATGGTCCTTACCTCAGTTAGTGTTAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCTGCTGTGCATCAATTATCACGCACGGTTCAGGAGGAAGCTGTGTTCAGCTGA 1041 0.5053 MALEAVVFPQDPFTYGCNNKDFLYSLVGGDGGGGGGSHEYGFQASSEDKPHVGIIINNNNIDHTLHANWDSSSPSVLQSVKEQWDSHSSPEACTVDQSLPRAFPLPPSSSSPEAAATGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGTINFVKELEQLLQCMKGQKKRTKEGSGFSDSSPFSEFFMFPQYSTRATQSSSSSSSKGYPGTCEANNNMARNPSSWAVADIEVTLVDGHANMKILCKKRPGMLLKMVVGLLSLGLSILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDEIAAAVHQLSRTVQEEAVFS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01997 346 CDD bHLH_AtFAMA_like 139 212 - -
Gma02g01997 346 Gene3D - 125 203 IPR036638 GO:0046983
Gma02g01997 346 PANTHER MAX DIMERIZATION, MAD 1 345 - -
Gma02g01997 346 SMART finulus 142 193 IPR011598 GO:0046983
Gma02g01997 346 Coils Coil 184 204 - -
Gma02g01997 346 MobiDBLite consensus disorder prediction 99 133 - -
Gma02g01997 346 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Gma02g01997 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
Gma02g01997 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 203 IPR036638 GO:0046983
Gma02g01997 346 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01997 Gma-Chr2 45406441 45410051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01997 1 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.647 3.19e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g01997 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01997 - - gmx:100803240 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01997 02 45406441 45410051 Gma02g01997 02 45406441 45410051 ECH
Gma14g01774 14 47846886 47850170 Gma02g01997 02 45406441 45410051 GST
Gma02g01997 02 45406441 45410051 Gma04g00903 04 9055281 9057135 PCT
Gma02g01997 02 45406441 45410051 Gma06g00889 06 8217394 8219276 PCT
Gma04g00903 04 9055281 9057135 Gma02g01997 02 45406441 45410051 PCT
Gma06g00889 06 8217394 8219276 Gma02g01997 02 45406441 45410051 PCT