Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01996 ATGGCTAGCAAACACAGAAAACTCTTCCCTGATGAAACAACAACAACCACAAACCAAACCCAAGATTGCTATGGCTTTTGTGACCCTGCATGCCCTTACAATTGTTACAATAACCCTGATTACTTCTTCTCTCCACCACCACCTTCTATTTCACATTCAAGCCAAGTTAATCACATATCCTCCTACTCGATCATTCTTGTTACTCTATTCACGGTCATTTTTGTTGTGGTTGGTTTCTACGTGATCAAAGTGAAGTGCTATGCTGCATGGTGCGGGTGGAGATTCAACAACGGTTCCGTTCCCTCTCAATCAGACACTGCTGAGGAGTTTCTCAATGAGAACCAAGTTGATCACCCCGTGTGGCTCATTGCCACTGTGGGGTTGCAACAATCGATCATCAACTCCATCACGGTTTGCAAGTACAAGAAGAATGAAAGGTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTTCAGGAAGAAGAGACTTTAAGACTCTTGCCAAAGTGCAACCATGCTTTTCATGTTCCTTGTATTGACACTTGGTTGAGATCACACACAAATTGTCCTCTTTGTCGGGCTGGTATTGTTTCTAGTAGTGTCAACTCTGAAGCACAAGCACCTGTGTCGAATTCGGAGCAAGAAAATGCAAATTTGGGGAGGAATCAAGATACCCTTTTGGAGAATTCAAGGAATAATGAATGTGATTTAAGCAGCAACATGGTTGCAGGGGAATCAAGTGAAGCACTTGATGAATCAAATTCTAAGGATAGGGTAAATGATCAAACTCAGAACGATGTGGTTCTGAATATCGAGATTCTAACAGAGACGGGATCTGTTTCAACTACAGAATCTGAAAGTGAAAGCCATCGTGTTGTTGATGATCACAAACAACATGATGACACAATGTTGAACACGGTTGATCAACGGAAGCAAGAGCAAGATGGTGAGTACTACTGCTCAAAAACGTGTAAAGCAATGCGTCGTTCATCTATTGAAGAGTGTTTGCATTTAAACCCGGTATCTATGAAAAGGTCGTTCTCCTCCTGCAATGGAAGGATTCTAACTTCGAGAGTTTATATGAGTCTAAACTCTAAACTCAATTCATCCCTATTAGAGTTTTCATTTTATGAAAGATGA 1146 0.4145 MASKHRKLFPDETTTTTNQTQDCYGFCDPACPYNCYNNPDYFFSPPPPSISHSSQVNHISSYSIILVTLFTVIFVVVGFYVIKVKCYAAWCGWRFNNGSVPSQSDTAEEFLNENQVDHPVWLIATVGLQQSIINSITVCKYKKNERLVEGTECSVCLNEFQEEETLRLLPKCNHAFHVPCIDTWLRSHTNCPLCRAGIVSSSVNSEAQAPVSNSEQENANLGRNQDTLLENSRNNECDLSSNMVAGESSEALDESNSKDRVNDQTQNDVVLNIEILTETGSVSTTESESESHRVVDDHKQHDDTMLNTVDQRKQEQDGEYYCSKTCKAMRRSSIEECLHLNPVSMKRSFSSCNGRILTSRVYMSLNSKLNSSLLEFSFYER 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01996 381 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Gma02g01996 381 SMART ring_2 153 194 IPR001841 -
Gma02g01996 381 CDD RING-H2_PA-TM-RING 152 195 - -
Gma02g01996 381 Pfam Ring finger domain 152 195 IPR001841 -
Gma02g01996 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Gma02g01996 381 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 360 - -
Gma02g01996 381 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 360 IPR044675 -
Gma02g01996 381 SUPERFAMILY RING/U-box 142 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01996 Gma-Chr2 45396291 45398032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01996 4 261 C3H Transcription Factor Family AT1G72220 42.244 5.63e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01996 - - gmx:100805705 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01996 02 45396291 45398032 Gma02g01996 02 45396291 45398032 ECH
Gma14g01773 14 47836850 47838050 Gma02g01996 02 45396291 45398032 GST