Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01966 ATGGCCAAAAAATCACAGCTGCGTACCCAGAAAAACAATGCTACTAATGACGATATTAATCTTAACGCAACCAACACTGTAATCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGACTCCCCACCTCAACGCAGCTCAATATACCGAGGAGTCACTAGGCACCGATGGACTGGCCGATACGAAGCTCATTTGTGGGACAAGCATTGCTGGAATGAATCACAGAATAAAAAAGGACGACAAGTTTTATACCATCCAGGCGCTTATGATAATGAAGAGGCAGCAGCACATGCTTATGATCTAGCAGCACTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTACCTGAATGAACTGAAAGAAATGGAGGGTCAATCACGGGAAGAGTATATCGGATCGCTGAGGAGGAAAAGCAGTGGTTTTTCTAGGGGGATTTCTAAATACAGAGGTGTTGCAAGGCATCATCATAACGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTCGGAACTTACGCTACCCAAGAAGAAGCTGCTACTGCCTATGACCTGGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTACATTAAGTGGCTTAAGCCCAACAACACCAACAGCAACAATGACCAGATTAGTATTAATCTCACTAACATAAATAATAATTGCACTAACAACTTCATCCCAAACCCTGATCAAGAACAAGAAGTTAGTTTCTTCCACAACCAGGATTCACTCAATAATACTATTGTAGAGGAAGCCACGTTGGTGCCACATCAGCCTCGTCCAGCAAGTGCCACGTTAGCATTGGAGCTTCTACTTCAGTCATCCAAGTTCAAGGAAATGGTGGAAATGACATCCGTGGCCAATCTTTCAACACAGATGGAATCTGATCAGTTGCCACAGTGCACATTTCCTGATCACATTCAGACATACTTTGAGTATGAAGATTCCAATAAATATGAGGAAGGGGATGATCTCCTGTTCAAGTTCAGCGAGTTCAGCTCCATTGTGCCGTTTTACCATTGTGACGAGTTCGAGAGTTGA 1104 0.433 MAKKSQLRTQKNNATNDDINLNATNTVITKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQVLYHPGAYDNEEAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNTNSNNDQISINLTNINNNCTNNFIPNPDQEQEVSFFHNQDSLNNTIVEEATLVPHQPRPASATLALELLLQSSKFKEMVEMTSVANLSTQMESDQLPQCTFPDHIQTYFEYEDSNKYEEGDDLLFKFSEFSSIVPFYHCDEFES 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01966 367 SUPERFAMILY DNA-binding domain 152 213 IPR016177 GO:0003677
Gma02g01966 367 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Gma02g01966 367 SMART rav1_2 49 123 IPR001471 GO:0003700|GO:0006355
Gma02g01966 367 CDD AP2 152 213 IPR001471 GO:0003700|GO:0006355
Gma02g01966 367 Gene3D AP2/ERF domain 152 213 IPR036955 GO:0003700|GO:0006355
Gma02g01966 367 Gene3D AP2/ERF domain 49 119 IPR036955 GO:0003700|GO:0006355
Gma02g01966 367 ProSiteProfiles AP2/ERF domain profile. 49 117 IPR001471 GO:0003700|GO:0006355
Gma02g01966 367 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 351 - -
Gma02g01966 367 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 351 - -
Gma02g01966 367 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Gma02g01966 367 Pfam AP2 domain 49 109 IPR001471 GO:0003700|GO:0006355
Gma02g01966 367 Pfam AP2 domain 152 203 IPR001471 GO:0003700|GO:0006355
Gma02g01966 367 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Gma02g01966 367 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
Gma02g01966 367 SUPERFAMILY DNA-binding domain 48 119 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01966 Gma-Chr2 45015862 45018387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01966 45 215 AP2-EREBP Transcription Factor Family AT5G57390 71.345 7.46e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma02g01966 AP2 3.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01966 K09285 - gmx:100793339 706.442