Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01960 ATGTCTGAACTTTCAAGTGAAAACAGTAATAAAAAGTCAGAAAATGCACTGTCAGATGAAGAGTCCTGCATAAAACAAACTTCAATAGTACTTCATGGGAAAGAAAATGCTGGCATCGTCAATGGAAAAAATTCACTTATTTCATTCATGTCAGGCATTGTTTCTGACCCTCAAAACGCTCTAAAGAGTTGGAAGTCACCGGGTGTTCATGTTTGTGATTGGTCAGGTGTAAGATGCAACAATGCAAGTGACATGATAATTGAGCTTGATCTCAGTGGAGGGTCACTAGGAGGCACCATTTCCCCTGCTCTTGCTAACATATCTTCCTTGCAAATTCTTGACCTTTCTGGCAACTATTTTGTGGGTCACATTCCAAAGGAACTAGGCTATTTGGTTCAGCTTGGACAACTCAGTTTGTCTGGGAATTTTCTTCAAGGGCACATTCCATCCGAGTTTGGTTCACTTCACAACTTGTACTACCTTAACTTGGGAAGCAATCATCTTGAGGGAGAGATTCCCCCATCACTTTTCTGTAATGGAACTTCACTGAGTTATGTAGACCTCTCTAACAATTCCTTAGGGGGAGAAATCCCCTTGAACAAAGAGTGTATCCTTAAAGACCTCAGGTTCCTATTACTTTGGTCTAACAAGCTTGTAGGCCAAGTTCCTTTAGCTCTTGCATACTCTACCAAGCTTAAATGGCTTGATTTGGAGTTGAATATGTTGAGTGGAGAGCTTCCTTTTAAGATTGTAAGTAATTGGCCACAACTACAGTTCCTCTACTTGTCATACAACAATTTTACCAGCCATGATGGTAATACCAACCTTGAACCTTTCTTTGCCTCCTTGGTGAATTTATCACACTTTCAAGAACTCGAATTGGCAGGAAACAATCTTGGTGGGAAGCTGCCTCATAACATTGGTGATCTTCCCACCAGCCTGCAACAACTTCACCTAGAAAAAAATCTAATATATGGCTCTATACCTCCACAAATTGGCAACCTTGTCAACCTGACTTTCTTGAAGTTGTCCAGTAACCTATTAAATGGATCTATCCCTCCCAGCCTCGGTCACATGAATAGGCTAGAGAGAATTTATTTGTCAAATAATTCACTATCTGGTGATATTCCATCAATCCTTGGTGATATAAAGCATCTGGGACTTCTAGACTTGTCAAGAAACAAGCTTTCTGGTCCAATACCAGATAGTTTTGCAAATCTCTCCCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACAATTCCACCAAGTCTGGGAAAATGTGTTAATTTGGAGATTTTAGACTTATCTCACAACAAGATAACAGGTTTGATTCCTGCAGAAGTAGCTGCCTTGGATAGCTTGAAATTATACCTAAATTTGTCAAACAATAACTTACATGGGTCTTTACCATTGGAGCTCAGCAAAATGGACATGGTGCTAGCTATTGATGTATCCATGAATAACCTCTCTGGCAGCGTCCCTCCACAACTAGAAAGTTGCACAGCACTGGAGTATCTCAACCTCTCTGGTAATTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGAAAATTGCTCTATATTCGAGCACTTGACGTGTCTTCAAATCAATTGACTGGGAAAATACCAGAGTCCATGCAGTTGTCTTCCTCTCTCAAGGAACTTAACTTCTCTTTCAACAAATTCTCAGGGAGAGTCTCACACAAGGGAGCATTTTCAAATCTTACCATTGACTCTTTCCTAGGAAATGATGGTCTCTGTGGCCGGTTTAAAGGCATGCAACATTGTCACAAGAAACGTGGTTATCATTTGGTGTTCTTGTTGATTCCTGTGTTACTATTTGGCACCCCTCTCCTATGCATGCTTTTTAGGTACTCCATGGTAACGATCAAGTCAAAAGTGAGAAATCGAATTGCTGTCGTTAGAAGAGGTGATTTGGAGGATGTAGAAGAGGGAACAGAAGACCACAAGTACCCAAGAATTTCATATAAACAACTTAGAGAAGCCACTGGAGGCTTCAGTGCTTCAAGCTTAATTGGTTCAGGCCGGTTTGGACAAGTCTACGAAGGAATGCTACAAGATAATACAAGAGTAGCTGTGAAGGTGTTGGATACAACGCATGGTGAGATTTCAAGGAGCTTTAGAAGGGAATATCAAATCCTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATCACAATTTGCTGTAGGCCAGAATTTAATGCCCTTGTTTTTCCCTTGATGCCAAATGGTAGCCTTGAGAAGTACCTATATCCAAGCCAAAGGTTGGATGTGGTTCAATTGGTAAGAATCTGCAGTGATGTAGCCGAGGGAATGTCCTATCTGCACCATTACTCTCCAGTGAAAGTAGTGCATTGTGATCTTAAGCCAAGCAATATACTCCTTGATGAAGATATGACAGCTTTGGTTACTGATTTTGGAATTTCAAGGCTTGTACAAAGTGATGAGAATACATCCATCAATGAATCAGCATCTTTCAGTTCAACACATGGTTTGTTATGTGGCTCAGTTGGTTATATAGCTCCTGAATACGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTACAGTTTTGGAGTACTTGTGTTGGAGATGGTCTCAGGTAGACGCCCCACAGATGTACTCAGCCATGAAGGCTCAAGCTTGTGTGAGTGGATTAAAAAGCAATACACACACCAACACCAACTTGAAAACTTTGTTGAACAAGCACTGCAAAGGTTCTCTCCTTGTGGCGTGCCAAACCATCGTAACAAAATTTGGAAAGATGTTATACTAGAACTCATTGAGCTGGGGCTAGTATGCACACAGTACAATCCTTCAACAAGACCAAGCATGCACGATATAGCTCAAGAGATGGAGAGATTGAAGGACTACCTCACTAAGTCAAACTTGCCCCCTCATTAA 2940 0.4088 MSELSSENSNKKSENALSDEESCIKQTSIVLHGKENAGIVNGKNSLISFMSGIVSDPQNALKSWKSPGVHVCDWSGVRCNNASDMIIELDLSGGSLGGTISPALANISSLQILDLSGNYFVGHIPKELGYLVQLGQLSLSGNFLQGHIPSEFGSLHNLYYLNLGSNHLEGEIPPSLFCNGTSLSYVDLSNNSLGGEIPLNKECILKDLRFLLLWSNKLVGQVPLALAYSTKLKWLDLELNMLSGELPFKIVSNWPQLQFLYLSYNNFTSHDGNTNLEPFFASLVNLSHFQELELAGNNLGGKLPHNIGDLPTSLQQLHLEKNLIYGSIPPQIGNLVNLTFLKLSSNLLNGSIPPSLGHMNRLERIYLSNNSLSGDIPSILGDIKHLGLLDLSRNKLSGPIPDSFANLSQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKITGLIPAEVAALDSLKLYLNLSNNNLHGSLPLELSKMDMVLAIDVSMNNLSGSVPPQLESCTALEYLNLSGNSFEGPLPYSLGKLLYIRALDVSSNQLTGKIPESMQLSSSLKELNFSFNKFSGRVSHKGAFSNLTIDSFLGNDGLCGRFKGMQHCHKKRGYHLVFLLIPVLLFGTPLLCMLFRYSMVTIKSKVRNRIAVVRRGDLEDVEEGTEDHKYPRISYKQLREATGGFSASSLIGSGRFGQVYEGMLQDNTRVAVKVLDTTHGEISRSFRREYQILKKIRHRNLIRIITICCRPEFNALVFPLMPNGSLEKYLYPSQRLDVVQLVRICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDEDMTALVTDFGISRLVQSDENTSINESASFSSTHGLLCGSVGYIAPEYGMGKHASTEGDVYSFGVLVLEMVSGRRPTDVLSHEGSSLCEWIKKQYTHQHQLENFVEQALQRFSPCGVPNHRNKIWKDVILELIELGLVCTQYNPSTRPSMHDIAQEMERLKDYLTKSNLPPH 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01960 979 Pfam Leucine rich repeat 361 420 IPR001611 GO:0005515
Gma02g01960 979 Gene3D Transferase(Phosphotransferase) domain 1 752 975 - -
Gma02g01960 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Gma02g01960 979 Pfam Leucine Rich Repeat 433 451 IPR001611 GO:0005515
Gma02g01960 979 Pfam Leucine Rich Repeat 507 528 IPR001611 GO:0005515
Gma02g01960 979 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 32 968 - -
Gma02g01960 979 SMART serkin_6 676 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01960 979 ProSiteProfiles Leucine-rich repeat profile. 433 454 IPR001611 GO:0005515
Gma02g01960 979 Gene3D Ribonuclease Inhibitor 204 602 IPR032675 -
Gma02g01960 979 ProSiteProfiles Protein kinase domain profile. 676 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01960 979 CDD STKc_IRAK 682 967 - -
Gma02g01960 979 SUPERFAMILY RNI-like 88 373 - -
Gma02g01960 979 ProSitePatterns Protein kinases ATP-binding region signature. 682 704 IPR017441 GO:0005524
Gma02g01960 979 Gene3D Phosphorylase Kinase; domain 1 655 750 - -
Gma02g01960 979 PANTHER OS04G0122200 PROTEIN 32 968 - -
Gma02g01960 979 Pfam Protein kinase domain 678 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g01960 979 SMART LRR_typ_2 155 179 IPR003591 -
Gma02g01960 979 SMART LRR_typ_2 131 154 IPR003591 -
Gma02g01960 979 SMART LRR_typ_2 335 359 IPR003591 -
Gma02g01960 979 SMART LRR_typ_2 286 310 IPR003591 -
Gma02g01960 979 SMART LRR_typ_2 407 431 IPR003591 -
Gma02g01960 979 SMART LRR_typ_2 383 406 IPR003591 -
Gma02g01960 979 SMART LRR_typ_2 432 454 IPR003591 -
Gma02g01960 979 SUPERFAMILY L domain-like 282 583 - -
Gma02g01960 979 Pfam Leucine rich repeat N-terminal domain 44 80 IPR013210 -
Gma02g01960 979 SUPERFAMILY Protein kinase-like (PK-like) 658 964 IPR011009 -
Gma02g01960 979 Gene3D Ribonuclease Inhibitor 41 203 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01960 Gma-Chr2 44950860 44957152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01960 43 974 Receptor kinase-like Gene Family AT3G47570 34.597 3.36e-157 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gma02g01960 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01960 - - gmx:100792446 1885.15