Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01955 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATCGCAACGAGCTCGTTGTTATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAGGTGTGTGAGATATGTGGCGATGATGTGGGACTCACCGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGCGTGCCGACCATGCTATGAGTATGAAAGAAGGGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCGCGGGTTGAGGGAGATGATGACGAGGAGGATGTGGATGATATTGAACATGAATTTAACATCGAGGAGCAGAACAAGCATAACCATTCTGCTGAAGCCATGCTGCATGGGAAGATGAGTTACGGAAGAGGTCCTGAAGATGATGAGAATGCTCAATTCCCAGCTGTTATTGCTGGTGGTCGCTCTCGGCCTGTTAGTGGGGAGTTACCAATAGCATCTCATTATGGGGATCAAATGTTAGCTTCTTCACTGCAAAATCGATCGCACCCATATCTGGCGTCGGATCCTCGAAATGGAAAATTGGATGAAGCCAAAGAGGATAGAATGGATGACTGGAAGTTGCAACAAGGCAATTTGGGGCATGAACCTGATGAAGATCCAGATGCAGCCATGTTAGATGAAGCAAGGCAACCGCTGTCAAGGAAGGTACCAATAGCATCCAGCAAAGTGAATCCATATAGGATGGTGATCGTGGCACGACTTGTTATCCTTGCATTCTTCCTCAGATATAGACTTATGAATCCTGTACATGATGCACTGGGGCTGTGGCTAACTTCTATTATATGCGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAGTGGTTTCCCATTGACCGAGAGACATACCTTGATCGTCTTTCAATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTGTGGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGTTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTGCCATTCTGCAAGAAATTTTCTATAGAACCTAGAGCACCAGAGATGTACTTCAGTGAGAAAATTGATTACCTCAAGGACAAGGTGCAGCCCACCTTTGTTAAGGATCGTCGAGCTATGAAGagagaatatgaagagtttaaggttaggatcaatgcacttgtggcaaaagctcagaaggttcctcaaggaggatggattatgcaggatgggacaccatggcctggaaataatactaaggatcatcctggtatgattcaagtctttcttggtcacagtggaggtcatgatactgaaggaaacgagcttcctcgtcttgtttatgtttcccgagagaaaaggcctggattccaacaccacaagaaagctggtgctatgaatgctttgattcgggtttccgctgtgctcacaaatgctcctttcatgctgaacttggattgtgatcattatgtcaataacagcaaggctgctcgagaggccatgtgctttttaatggacccccaaactgggaagaaggtctgctatgtccaatttcctcaaagatttgatggcattgataggcatgatcgttatgctaatagaaacacggttttctttgatATTAACATGAAGGGCCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACAGGGTGCGTATTTAGGAGGCAAGCTTTATATGGCTACAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGATGCAAATGGAGAGGCAGCAAGCCTAAGAGGAATGGATGATGACAAAGAAGTGCTGATGTCCCAGATGAATTTTGAAAAGAAATTTGGACAGTCATCTATTTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCGCAAGTCCAGCAAGCCAACTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGAATAGAGCTAGGTTGGATTTACGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCAAAGAGAGCAGCATTCAAGGGTACTGCTCCCATCAATTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCACTAGGCTCCATAGAGATCTTCTTCAGTCGTCATTGCCCTTTATGGTATGGTTATAAGGAAGGGAAGTTGAAGTGGCTTGAGAGATTTGCCTACGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTGTTCTTCCTGCTGTTTGTTTACTCACTGATAAATTCATCATGCCGCCGATAAGCACTTTTGCTGGTTTGTACTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGTCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAAGAATTTGGAGAATTATACACCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACCATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAACGGGTACCAATCTTGGGGACCTCTATTTGGAAAACTATTCTTTTCATTTTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCCACCATAGTTGTTATATGGTCAGTTCTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCGTTTGTATTAAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA 3102 0.3788 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEEQNKHNHSAEAMLHGKMSYGRGPEDDENAQFPAVIAGGRSRPVSGELPIASHYGDQMLASSLQNRSHPYLASDPRNGKLDEAKEDRMDDWKLQQGNLGHEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGKRKKVKYEGNDANGEAASLRGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSASPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01955 1033 Coils Coil 423 443 - -
Gma02g01955 1033 Pfam Cellulose synthase 325 1027 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma02g01955 1033 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1033 - -
Gma02g01955 1033 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1033 - -
Gma02g01955 1033 SUPERFAMILY RING/U-box 21 109 - -
Gma02g01955 1033 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Gma02g01955 1033 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gma02g01955 1033 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Gma02g01955 1033 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Gma02g01955 1033 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 470 616 IPR029044 -
Gma02g01955 1033 SUPERFAMILY Nucleotide-diphospho-sugar transferases 338 795 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01955 Gma-Chr2 44897425 44902668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01955 1 1033 Cell Wall Biosynthesis AT5G17420 85.411 0.0 1829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01955 K10999 - gmx:100789821 2128.98