LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma02g01953	ATGAACATGGATTTGTTCAGGAAGTGCATGGAGCCGGTGGAGAAGTGTTTGCGTGATGCCAAGATAGACAAGAGTCATGTTCATGAGGTTGTGCTTGTTGGAGGGTCCACTAGGATCCCCAAGGTTCAGCAACTCTTGCAGGATTTCTTCAATGGGAAAGAGCTTTGCAAGAGCATTAACCCCGATGAAGCTGTTGCATACGGTGCTTCAGTTCAAGCTGCCATCTTGAGCGGTGAAGGAGACGAGAAGGTTCAGGATTTGTTGCTGCTGGATGTTACACCTCTCAGTCTCGGGCTCGAAACTGCGGGTGGTGTTATGACTGTACTAATTCCGCGGAACACTACAATTCCCACCAAGAAGGAGCAGATTTTCTCAACCTATTCCGATAACCAACCCGGGGTGTTGATCCAAGTGTTCGAAGGAGAACGAGCTAGAACAAAGGACAACAATCTTCTTGGGAAGTTTGAGCTTACTGGGATCCCTCCAGCACCAAGAGGAGTGCCTCAGATCAATGTCTGCTTCGACATCGACGCTAACGGGATTCTGAATGTCTCTGCAGAGGACAAGACTGCTGGTGTGAAGAACAAGATCACGATCACCAACGACAAGGGTAGGCTGAGCAAGGAGGAGATTGAGAAGATGTTGAAGGATGCAGAGAGGTACAAGGCGGAGGATGAAGAGGTGAAGAAGAAGGTGGAGGCGAAAAACTCGCTTGAGAACTACGCGTATAATATGAGAAACACAATAAAGGATGAGAAGATTGGAGAGAAGTTGAGCCCGGATGAGAAGGAGAAGATTGAGAAGGCTGTGGAGGATGCGATACAGTGGTTGGAGGGGAACCAGTTGGCGGAAGTGGATGAGTTTGAGGACAAGCAGAGGGAGTTGGAAGGGATCTGCAACCCCATCATTGCGAAAATGTACCAGGGTGCTGCTGCTAGACCTGGTGGAGATGTTCCTACGGGTGATGATGACATGCCTGGTGCTGGTGGTGCTGGTTCTGGCGCGGGACCTAAGATTGAAGAAGTTGACTAA	1032	0.4942	MNMDLFRKCMEPVEKCLRDAKIDKSHVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGASVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMLKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGEKLSPDEKEKIEKAVEDAIQWLEGNQLAEVDEFEDKQRELEGICNPIIAKMYQGAAARPGGDVPTGDDDMPGAGGAGSGAGPKIEEVD	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma02g01953	343	PRINTS	70kDa heat shock protein signature	86	105	-	-
	Gma02g01953	343	PRINTS	70kDa heat shock protein signature	59	79	-	-
	Gma02g01953	343	PRINTS	70kDa heat shock protein signature	27	43	-	-
	Gma02g01953	343	PRINTS	70kDa heat shock protein signature	167	183	-	-
	Gma02g01953	343	PANTHER	HEAT SHOCK PROTEIN 70KDA	1	315	IPR013126	GO:0005524\|GO:0140662
	Gma02g01953	343	SUPERFAMILY	Actin-like ATPase domain	2	78	IPR043129	-
	Gma02g01953	343	SUPERFAMILY	Heat shock protein 70kD (HSP70), C-terminal subdomain	233	314	IPR029048	-
	Gma02g01953	343	MobiDBLite	consensus disorder prediction	311	343	-	-
	Gma02g01953	343	Pfam	Hsp70 protein	1	308	IPR013126	GO:0005524\|GO:0140662
	Gma02g01953	343	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	81	234	IPR029047	-
	Gma02g01953	343	Gene3D	-	9	59	-	-
	Gma02g01953	343	Gene3D	-	235	309	IPR029048	-
	Gma02g01953	343	SUPERFAMILY	Heat shock protein 70kD (HSP70), peptide-binding domain	82	239	IPR029047	-
	Gma02g01953	343	PANTHER	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED	1	315	-	-
	Gma02g01953	343	Coils	Coil	208	235	-	-
	Gma02g01953	343	ProSitePatterns	Heat shock hsp70 proteins family signature 3.	30	44	IPR018181	-
	Gma02g01953	343	Gene3D	-	60	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma02g01953	Gma-Chr2	44885258	44886469	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma02g01953	1	343	Calmodulin-binding Proteins	AT1G16030	83.090	0.0	585

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma02g01953	K03283		-	gmx:100790356	655.981