Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01927 ATGAGATTGTCAAAGCACAAAACGAAGGGGTTATTCTTCAAAAGTTCGATAACTCCTTGCAAACTGATAGTCATGGGATTTGGAATTATTAAACTGAACTATGACGCAACGTCCATCCAAGGTGATCTGTTTGTTGCTTGCGGTGGGTTGATTCGAGATGATCATGACAATTTCATTCATGATTTTTCTCAAAGAATAGGCCGATGTTCGATTGTTGAGGTTGAGCTTTGGTCGATTTTATATGGTATGAGGTTGGTGGCTGATAGACACATGAAAAAGGTTATTGTGGAGTCTGATTCTTTGGCAGCAATTAATCTAATTCATGAAGGTTGTCCGACTTTGCATCCGTGCTTTGGAATAGTGGAAGAGATCAAGAACCTATATAATGAATTTGAGCATTGCAGCTGCAGACATATTCTCAGGGAAGCTAATATACTTGCTAATACGTTCGCGAAACATGGTTTATCTATAAGTACTGATTCTCAATTCTTTTGTAACGTTCCAACTTTTGCTTTGGACCCTTTTCAGGCCGCAGCTTTCGTTCAAGCTCTCTACCACGGCTTCTCTGGATCTCTCCAACCCTCTAACCAAACTCACCATTTTCAACAACAGCCTCAGCCTCATGAACGGAGTTTTGGAGCTTCGGCTCAGGCTAACGGTGGCGGTTCGGGTCAGCCGAAGCAGAGGGTTAGAGCCAGGAGGGGACAAGCCACGGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTGCAAGAACTCGTTACGAATGCCAACAAGACTGACAAGGCCTCCATGCTGGATGAGATCATTGATTATGTGAGGTTCCTACAGCTCCAAGTCAAGGGAACCCCTTCATCAAACTTAGCAAATCACGTGGATTTTGCTAAAGTGCTTCAACCAATCCAATCACAAATTTCGGAGTTTCCCATCCCTCTATCTCATTTCTTTTGGTTAAGAGGAAGCAAAACAATCTAA 1002 0.4381 MRLSKHKTKGLFFKSSITPCKLIVMGFGIIKLNYDATSIQGDLFVACGGLIRDDHDNFIHDFSQRIGRCSIVEVELWSILYGMRLVADRHMKKVIVESDSLAAINLIHEGCPTLHPCFGIVEEIKNLYNEFEHCSCRHILREANILANTFAKHGLSISTDSQFFCNVPTFALDPFQAAAFVQALYHGFSGSLQPSNQTHHFQQQPQPHERSFGASAQANGGGSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVTNANKTDKASMLDEIIDYVRFLQLQVKGTPSSNLANHVDFAKVLQPIQSQISEFPIPLSHFFWLRGSKTI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01927 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
Gma02g01927 333 Pfam Reverse transcriptase-like 33 153 IPR002156 GO:0003676|GO:0004523
Gma02g01927 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 294 IPR036638 GO:0046983
Gma02g01927 333 SUPERFAMILY Ribonuclease H-like 30 157 IPR012337 -
Gma02g01927 333 PANTHER TRANSCRIPTION FACTOR BHLH69 177 306 - -
Gma02g01927 333 MobiDBLite consensus disorder prediction 194 224 - -
Gma02g01927 333 Gene3D - 233 305 IPR036638 GO:0046983
Gma02g01927 333 Coils Coil 249 269 - -
Gma02g01927 333 MobiDBLite consensus disorder prediction 194 241 - -
Gma02g01927 333 Pfam Helix-loop-helix DNA-binding domain 241 286 IPR011598 GO:0046983
Gma02g01927 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 177 306 - -
Gma02g01927 333 CDD RNase_H_like 32 152 IPR044730 -
Gma02g01927 333 SMART finulus 242 291 IPR011598 GO:0046983
Gma02g01927 333 Gene3D - 29 167 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01927 Gma-Chr2 44574589 44582167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01927 183 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 64.912 2.80e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g01927 RVT_3 4.9e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01927 - - gmx:100801457 171.4