Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01904 ATGTCGACAAACCACTACACCATGGACCTTCCCGAACCAACACTCTGGTGGCCACACCCACACCAACAACAACTAACCTTAATAGATCCAGACCCTCTCCCTCTGAACCTCAACAACGACGACAACGACAATGGCGACGACAACGACAACGACGAAAACCAAACAGTTACAACAACCACAACAGGAGGAGAAGAAGAAATAATAAACAATAAAGAACCGATGTTCGAGAAGCCGCTAACCCCGAGCGACGTGGGGAAGCTGAACCGCCTCGTAATCCCGAAGCAGCACGCTGAGAAGTACTTTCCACTGAGTGGTGGTGACTCGGGCAGTAGCGAGTGCAAGGGGCTGTTACTGAGTTTCGAGGACGAGTCGGGGAAGTGCTGGCGCTTCCGCTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGTTACGTGAAGGACAAGCGCCTCGATGCGGGAGATGTCGTTTTATTCCAGCGCCACCGCGCCGACGCGCAGCGCCTCTTCATCGGCTGGAGGCGCAGGCGGCAGAGCGACGCCCTGCCGCCGCCTGCGCACGTTAGCAGCAGGAAGAGTGGTGGTGATGGGAATAGTAGTAAGAATGAGGGTGATGTGGGCGTGGGCTGGACCAGAGGGTTCTatcctgcgcatcatccttatcctacgcatcatcatcatccCTCGCCATACCATCACCAACAAGATGACTCTCTTCATGCAGTTAGAGGGTCCCAAGGTCAGAACCAAAGGACGAGACCAGTGGGAAACAGCAGTTCTAGTTCGAGTTCGAGTTCAAGGGTACTTAGGCTATTCGGGGTCAACATGGAATGCCAACCCGAACATGATGATTCTGGACCCTCCACACCCCAATGCTCCTACAATACTAACAACATATTGCCATCCACACAGGGCACAGATATTCATTCCCATCTCAATTTCTACCAACAACAACAAACTTCTAATTCCAAGCCTCCCCCTCATCACATGATGATACGTCACCAACCATACTACTACTAG 1035 0.5092 MSTNHYTMDLPEPTLWWPHPHQQQLTLIDPDPLPLNLNNDDNDNGDDNDNDENQTVTTTTTGGEEEIINNKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGDSGSSECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRADAQRLFIGWRRRRQSDALPPPAHVSSRKSGGDGNSSKNEGDVGVGWTRGFYPAHHPYPTHHHHPSPYHHQQDDSLHAVRGSQGQNQRTRPVGNSSSSSSSSSRVLRLFGVNMECQPEHDDSGPSTPQCSYNTNNILPSTQGTDIHSHLNFYQQQQTSNSKPPPHHMMIRHQPYYY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01904 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 303 IPR044800 GO:0003700
Gma02g01904 344 CDD B3_DNA 73 172 IPR003340 GO:0003677
Gma02g01904 344 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 35 303 - -
Gma02g01904 344 Gene3D - 64 189 IPR015300 -
Gma02g01904 344 Pfam B3 DNA binding domain 75 181 IPR003340 GO:0003677
Gma02g01904 344 MobiDBLite consensus disorder prediction 185 272 - -
Gma02g01904 344 ProSiteProfiles B3 DNA-binding domain profile. 75 182 IPR003340 GO:0003677
Gma02g01904 344 SUPERFAMILY DNA-binding pseudobarrel domain 70 183 IPR015300 -
Gma02g01904 344 MobiDBLite consensus disorder prediction 28 65 - -
Gma02g01904 344 MobiDBLite consensus disorder prediction 323 344 - -
Gma02g01904 344 MobiDBLite consensus disorder prediction 245 272 - -
Gma02g01904 344 MobiDBLite consensus disorder prediction 51 65 - -
Gma02g01904 344 SMART B3_2 75 182 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01904 Gma-Chr2 44138028 44140697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01904 71 298 RAV Transcription Factor Family AT5G06250 51.282 4.85e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma02g01904 B3 1.1e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01904 - - gmx:100818164 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01904 02 44138028 44140697 Gma02g01904 02 44138028 44140697 ECH
Gma10g00698 10 7933076 7936031 Gma02g01904 02 44138028 44140697 GST
Gma19g01869 19 47884486 47886143 Gma02g01904 02 44138028 44140697 PCT
Gma03g01828 03 44290675 44292336 Gma02g01904 02 44138028 44140697 PCT