Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01887 ATGTCCAGCGCCGCCGGAGTTCCCGACCGCCTCGCTTCGCAGCCGCGGGGGGCTGCCGGCGCCCCTGCCCTCCCGCCGCTCAAGCGCCACCTTGCCTTCGTCACGAAACCGCCCTTCGCCCCGCCCGATGAGTACCACAGCTTCTCCAGTGCCGACTCCCGCCGCGCCGCGGATGAAGCCGTCGTCGTTAGATCTCCGTACATGAAGCGGAAGAGTGGAATGACTGACAGTGAAGGGGAGTCACAAGCACAAAAGTGGAGTAACAGCCCAGGATACACTAATGTTAGTAATGTAACGAATAATAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGGGGGAAGGGCACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCATGTCCTCCGACACCCATGTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTAGCAGCTGTCGCTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAACATGCGGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACGTCTGGTGAGGTGGATGGTGATATCTCTGTGCTTAAGGCAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAATTTGAGTGAAAATGAAAACAACCAGAAGTGCCTTTTCGTGACTGAAGAAGATATTAAGGGCCTGCCTTGCTTCCAGAATGAAACTTTAATAGCAATTAAAGCTCCGCATGGAACCACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTAGACTATCCGCAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGCTCCCCATGATCCCACTTGCTTCCAGTTCTGGTTCCAATGAGCAACTAATGACGGAAATGGTTCCTGCTGAATGCAGCGGAAAAGAACTTGAACCTCAAACTCAGCTCTCTTCTCATGCATTCTCTGATCTAAATGCTTCACAGGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGACGTTAGTATAACAGATATGTGGAGAACAGATTCTACTGTTGATTGGAATGGTATAGACATGCTTCATCCTGATTTTGGAATCATTTCGAGGCCTCAAAGTCCATCATCTGGGCTTGCTGAAGTGCCATCAACAGGAGCAAACTCTATTCAGAAGTGA 1407 0.4698 MSSAAGVPDRLASQPRGAAGAPALPPLKRHLAFVTKPPFAPPDEYHSFSSADSRRAADEAVVVRSPYMKRKSGMTDSEGESQAQKWSNSPGYTNVSNVTNNSPFKTPVSAKGGRAQKAKASKEGRSCPPTPMSNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKAEVEKLSLEEQGLDDQIREMQERLRNLSENENNQKCLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEVNGAELPMIPLASSSGSNEQLMTEMVPAECSGKELEPQTQLSSHAFSDLNASQEFAGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSTVDWNGIDMLHPDFGIISRPQSPSSGLAEVPSTGANSIQK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01887 468 PANTHER TRANSCRIPTION FACTOR E2FB 25 447 - -
Gma02g01887 468 PANTHER TRANSCRIPTION FACTOR E2F 25 447 IPR015633 GO:0000978|GO:0006357
Gma02g01887 468 SMART E2F_TDP_2 148 213 IPR003316 GO:0005667|GO:0006355
Gma02g01887 468 CDD E2F_DD 226 330 IPR032198 GO:0046983
Gma02g01887 468 MobiDBLite consensus disorder prediction 1 144 - -
Gma02g01887 468 Pfam E2F transcription factor CC-MB domain 229 329 IPR032198 GO:0046983
Gma02g01887 468 SUPERFAMILY E2F-DP heterodimerization region 226 330 IPR037241 -
Gma02g01887 468 MobiDBLite consensus disorder prediction 448 468 - -
Gma02g01887 468 Coils Coil 226 267 - -
Gma02g01887 468 Gene3D - 142 215 IPR036388 -
Gma02g01887 468 Pfam E2F/DP family winged-helix DNA-binding domain 150 213 IPR003316 GO:0005667|GO:0006355
Gma02g01887 468 MobiDBLite consensus disorder prediction 77 107 - -
Gma02g01887 468 MobiDBLite consensus disorder prediction 127 144 - -
Gma02g01887 468 SUPERFAMILY "Winged helix" DNA-binding domain 148 211 IPR036390 -
Gma02g01887 468 Gene3D - 220 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01887 Gma-Chr2 43777257 43782108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01887 21 465 E2F-DP Transcription Factor Family AT2G36010 55.579 7.46e-164 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma02g01887 E2F_CC-MB 6.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01887 K06620 - gmx:100811762 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01887 02 43777257 43782108 Gma02g01887 02 43777257 43782108 ECH
Gma10g00721 10 8794201 8798557 Gma02g01887 02 43777257 43782108 GST