Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01857 ATGGACGAAATTGAAGTTCCTCAATACTTCATATGCCCAATATCCCTCCAAATCATGAAGGACCCCGTTACGGCCATAACGGGCATAACATATGATCGTGAAAGCATAGAGCAATGGCTATTCACCAACAAGAACACCACATGCCCCGTGTCCAACCAACCCCTCCCTAGAGACTCTGACCTAACCCCTAACCACACCCTTCGCCGATTGATCCAAGCTTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGGATTCCGACCCCAAAATCCCCTCTCAACAAAATACAAGTCCTTAAACTCCTCAAAGACCTCAATGACCCCAAAAGCCTCTTGCAATTGGAGCTTCTTGCCGCGGAGAGCGAGAGGAACAAAAAGTGCTTGCTAGAGGCTGGTGTGCCAAGGGCCATGATCATGTTCATTGTGAATTGTTATAAAAAGGGTCAAATTCAAAAGGGTCTCGAAGAAGCTCTTAGCATATTGCAATTTGTCAAGATCCCCAGGGAGGAATGTGCAATTCTCCTAAAGGACAACGATCAAATACTGGATTCTCTAGCATGGCTTCTAAGCCATGACGAAATGGAAAACTCCATAGCCGTGAAATCACACGCGGTTCAAGTGCTAAAAAAAATCATCAGCAAGGACGACATGTGTCGCGTTCTCGAGAGGCTCAAACCCTCGTTCTTCGAAACAATGGTGAAGATTCTAGGACATCATGCGATAACACAACAAGGGGTGAATGCTGCACTTCACGTCTTGCTAAGAGCTTCTTCCATGACACGACACAGAATCACGATGGTGGAAGCTGGTTTGGTTCACGAACTCATTGAGATCGAACTAATGGAACCAGAAAAAAGAATCACGGAACTAACCCTAGCAATATTGTTTCATTTGTGCTCTTGCGCCAACGGAAGAGCCAAGTTTCTGAGCCACGAAGGGTCCATCGCGGTGGTGACGGAGAGAATACTGAAGGTTTCGGCATCGGTGGACGATAGGGCCGTGTTTGTTCTCTCACAGGTTTCGAAGTTTTCGGGCACGACCATGGTCTTGCAGGAGATGTTGAGAGTGGGGACTGTGGCGAAGCTTTGCATGGTGCTTCAGGCTGATCGTGCCAAGTATTTGAAGGACAAAGCGATGGAGATTCTCAAGGGGCACTCTGAGGTTTGGGCGAACTCTCCTTGCATTCCCAATACGTCTTTTGGTGGATACGTGAAATACTGA 1221 0.475 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEQWLFTNKNTTCPVSNQPLPRDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKSPLNKIQVLKLLKDLNDPKSLLQLELLAAESERNKKCLLEAGVPRAMIMFIVNCYKKGQIQKGLEEALSILQFVKIPREECAILLKDNDQILDSLAWLLSHDEMENSIAVKSHAVQVLKKIISKDDMCRVLERLKPSFFETMVKILGHHAITQQGVNAALHVLLRASSMTRHRITMVEAGLVHELIEIELMEPEKRITELTLAILFHLCSCANGRAKFLSHEGSIAVVTERILKVSASVDDRAVFVLSQVSKFSGTTMVLQEMLRVGTVAKLCMVLQADRAKYLKDKAMEILKGHSEVWANSPCIPNTSFGGYVKY 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01857 406 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Gma02g01857 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Gma02g01857 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gma02g01857 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 400 - -
Gma02g01857 406 SUPERFAMILY RING/U-box 3 79 - -
Gma02g01857 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Gma02g01857 406 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Gma02g01857 406 Gene3D - 98 391 IPR011989 -
Gma02g01857 406 CDD RING-Ubox_PUB 10 53 IPR045210 -
Gma02g01857 406 SUPERFAMILY ARM repeat 101 366 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01857 Gma-Chr2 42914685 42916123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01857 2 395 U-box Gene Family AT3G11840 42.177 2.15e-115 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01857 - - gmx:100798446 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01857 02 42914685 42916123 Gma02g01857 02 42914685 42916123 ECH
Gma19g01904 19 48231923 48233182 Gma02g01857 02 42914685 42916123 PCT
Gma03g01863 03 44594085 44595852 Gma02g01857 02 42914685 42916123 PCT