Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01851 ATGGACGAGATCGACGTGCCTCCGTTCTTCGTGTGCCCTATTTCATTAGAGCTCATGAAGGACCCCGTGACGGTCTCCACCGGCATCACCTACGACCGCGACAGCATCGAGAAGTGGCTCTTCGCCGAGGTGAAGAACGACACGTGTCCCGTCACGAAGCAGCCCCTCCTCCCGGACCTCACTCCGAACCACACGCTCCGCAGACTCATCCAAGCCTGGTGCACCGTCAACGCCTCCCACGGCGTCCAGAGAATCCCCACACCAAAACCACCGGTCGACAAAACCCTCATCGAGAAACTCCTCCGCAACACCTCGGCTTCGGACTCCCCGAGCCTCCAGCTCCGGTCCCTCCGAACCCTCAAGTCCATTGCCTCGGAATCCCAATCAAACAAACGCTGCATCGAATCTGCAGAAGGCGCAGTTAATTTCCTAGCAACAATTATAaccaccaccaccaccaccaccaccaACCTACTCGATGATGACATCGAGTTGGAAATAAAAACAAGTACAGCCCACGAAGCATTGAGCCTTTTACACAGCATTCAGCTGTCAGAGTCCGGTTTGAAGGCTCTGTTGAACCATCCAGAATTTATAAACTCTCTAACCAAGATGATGCAAAGAGGGATCTACGAGTCACGCGCCTACGCTGTTTTCTTGCTGAATTCCTTGTCCGAGGTGGCGGATCCGGCGCAGTTGATTAACCTAAAAACTGATTTGTTCACTGAATTGGTTCAGGTTCTTAAGGATCAGGTTTCGGAGAAGGTCTCGAAGGCGACCCTGCAGGCATTGATTCAGGTGTGTTCGTGGGGCAGAAATAGGGTGAAGGCTGTGGAGGCTGGAGCTGTGCCGGTTCTGGTGGAGCTTCTTCTCGAATGCAACGAGAGAAAACCGATAGAAATGGTGCTGGTTTTGTTGGAGATTTTATGTCAGAGTGCTGACGGGAGGGCGGGGCTGTTGGCCCACGCGGCGGGGGTGGTGATCGTGGCGAAGAAGATTCTGAGGGTTTCAACGATGGCGAACGATAGGGCGGCGAAGATTCTGCTTTCGGTGTGCAGATTTTCCCCCACGCCGGGCTTGGTGCAGGAGATGGTGCAGCTTGGGGTGGTGGCAAAGCTTTGTCTGGTGCTGCAGGTGGATAGTGGGAACAAAGCAAAAGAGAAAGCTAGGGAGATTCTCAAATTGCATGCTAGGGCTTGGAGGAATTCGCCTTGCATACCTCACAATTTGCTTGCTTCGTTTCCAATGAGTTCGTGA 1257 0.5219 MDEIDVPPFFVCPISLELMKDPVTVSTGITYDRDSIEKWLFAEVKNDTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGVQRIPTPKPPVDKTLIEKLLRNTSASDSPSLQLRSLRTLKSIASESQSNKRCIESAEGAVNFLATIITTTTTTTTNLLDDDIELEIKTSTAHEALSLLHSIQLSESGLKALLNHPEFINSLTKMMQRGIYESRAYAVFLLNSLSEVADPAQLINLKTDLFTELVQVLKDQVSEKVSKATLQALIQVCSWGRNRVKAVEAGAVPVLVELLLECNERKPIEMVLVLLEILCQSADGRAGLLAHAAGVVIVAKKILRVSTMANDRAAKILLSVCRFSPTPGLVQEMVQLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPHNLLASFPMSS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01851 418 CDD RING-Ubox_PUB 10 54 IPR045210 -
Gma02g01851 418 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Gma02g01851 418 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Gma02g01851 418 SUPERFAMILY ARM repeat 89 401 IPR016024 -
Gma02g01851 418 Gene3D - 84 402 IPR011989 -
Gma02g01851 418 SUPERFAMILY RING/U-box 3 80 - -
Gma02g01851 418 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Gma02g01851 418 PANTHER WDSAM1 PROTEIN 1 416 IPR045185 GO:0061630
Gma02g01851 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Gma02g01851 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01851 Gma-Chr2 42735299 42737024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01851 2 415 U-box Gene Family AT2G35930 54.394 3.21e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01851 - - gmx:100795263 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01851 02 42735299 42737024 Gma02g01851 02 42735299 42737024 ECH
Gma10g00758 10 10017763 10019615 Gma02g01851 02 42735299 42737024 GST
Gma02g01851 02 42735299 42737024 Gma19g01904 19 48231923 48233182 PCT
Gma02g01851 02 42735299 42737024 Gma03g01863 03 44594085 44595852 PCT