Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01844 ATGAACGACTTGTTCTCCGGTTCCTTCTCCCGCTTCCGCAGCGACCAGTCCTCCCCGGACCGCCACCACGACATCGAGATGGGCGCCACCGCCTCCGGCGGCGGTCGCGGCGGCGAGGTGAACCTTGACAAGTTCTTCGAGGACGTGGAAGGCGTGAAGGAGGAACTAAAGGAGTTGGAAGGTTTGGCTCAGAGTCTAAGGAGCAGCCACGAGCAGAGCAAGACGCTGCACAACGCGAAGGCGGTGAGGGACCTGCGCGCGCGCATGGACGGCGACGTCTCGGCGGCGCTGAAGAAGGCGAAGCTGATCAAGCTCAAGCTCGAGGCGCTGGAGCGGTCCAACGCCGCGAACCGGAACATGCCTGGGTGTGGACCGGGTTCGTCCTCGGACCGGACCCGGACCTCCGTGGTCAACGGGCTCAAGAAGAAGCTGAAGGATGCTATGGAGAGTTTTAACGAGATTCGCCAGCTTGTGTCCTCGGAGTACCGCGAGACCGTGCAGCGGCGGTACTTCACCGTCACCGGCGAGAATCCCGATGACAAGACTCTCGATCTCTTGATCTCCACTGGTGAGAGTGAGACTTTCCTTCAGAAGGCCATTCAAGAGCAAGGAAGGGGTAGAATTCTGGACACCATCACGGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGATAGAAAAGAATCTCAAGGAGTTGCACCAAGTGTTCCTTGACATGACAGTGTTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCATTCGTTTGTGCGCACTGGAGCTGAGCAGTTGCAGACTGCGCGGAAGCACCAGAAGAACACCAGGAAATGGACCTGCTATTGTATCATACTTCTTCTGGTGATCATCTTGTTTGTGGTGCTCTTCACTGTGAAGCCGTGGGAAAATAGCAGTAGTGGCGGCAATGGGGGTGGTCAGCCTGCACCAGCTCAAACACCTCCATCACCTTCACCTCCTGTTAATGCTTAA 1008 0.5615 MNDLFSGSFSRFRSDQSSPDRHHDIEMGATASGGGRGGEVNLDKFFEDVEGVKEELKELEGLAQSLRSSHEQSKTLHNAKAVRDLRARMDGDVSAALKKAKLIKLKLEALERSNAANRNMPGCGPGSSSDRTRTSVVNGLKKKLKDAMESFNEIRQLVSSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTITEIQERHDAVKEIEKNLKELHQVFLDMTVLVQHQGEQLDDIESHVARAHSFVRTGAEQLQTARKHQKNTRKWTCYCIILLLVIILFVVLFTVKPWENSSSGGNGGGQPAPAQTPPSPSPPVNA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01844 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Gma02g01844 335 PANTHER SYNTAXIN 7 312 IPR045242 -
Gma02g01844 335 CDD SynN 42 199 IPR006011 GO:0016020
Gma02g01844 335 MobiDBLite consensus disorder prediction 309 335 - -
Gma02g01844 335 SUPERFAMILY t-snare proteins 40 267 IPR010989 GO:0016020|GO:0016192
Gma02g01844 335 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma02g01844 335 CDD SNARE_syntaxin1-like 211 273 - -
Gma02g01844 335 SMART tSNARE_6 207 274 IPR000727 -
Gma02g01844 335 Gene3D - 207 305 - -
Gma02g01844 335 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Gma02g01844 335 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 312 - -
Gma02g01844 335 Gene3D - 39 172 - -
Gma02g01844 335 Coils Coil 42 69 - -
Gma02g01844 335 SMART SynN_4 37 163 IPR006011 GO:0016020
Gma02g01844 335 MobiDBLite consensus disorder prediction 1 39 - -
Gma02g01844 335 Pfam SNARE domain 248 300 IPR000727 -
Gma02g01844 335 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01844 Gma-Chr2 42590364 42593274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01844 31 324 SNARE and Associated Proteins AT3G11820 72.403 2.96e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01844 K08486 - gmx:100809258 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00764 10 10143545 10151087 Gma02g01844 02 42590364 42593274 GST