Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01843 ATGAACGACTTGTTCTCCGGCTCCTTCTCCCGCACCAATGACCAAGTCTCGCCGGACCACCACCATGTGATCGAGATGGCGGCCACCGCATCGCCAACGGCCGAGGGAAGCGTGAATCTCGAAAAGTTCTTTCAAGAAGTTGAGCAGGTAAAAGAGGAGCTGAAGGAGCTAGAGCGTCTCCATGAAAATCTGCGTGGGTCCCACGAGAAAAGCAAGATCCTTCACAGCGCCAAAGCTGTGAAGGAACTTCGCTTACGCATGGACAGTGACGTGACACTTGCTCTAAAGAATGCAAAGCTCGTTAAGGTTCGGCTTGAGGCACTGGACCGGTCCAACCAGACCAGTCAAAGCTTGCCTGGTTCGGGACCTGGTTCGTCCTCAGACCGGACCAGAACGTCCGTTGTGAGCGGACTGAGGAAGAAGCTGAAGGACTCGATGGACAGCTTCAACAGCCTCAGACAAAAGATATCGTCAGAGTATAGGGAAACCGTGCAGCGTAGATATTATACTGTCACCGGAGAGAACCCTGATGACAAAACCATTGACCTCCTTATTTCTACGGGTGAGAGTGAAACATTCTTGCAGAAGGCGATCCAGCAGCAAGGTAGAGCCAGTGTGATGGACACGATCCAAGAGATTCAAGAGAGGCACGACACAGTCAAGGAAATAGAGAGAAACCTAAACGAGCTCCACCAAGTGTTCTTGGACATGGCCGTGCTGGTGCAGTCCCAGGGCGAACAACTGGACGACATCGAGAGCCACGTGGCGCGCGCCAATTCGTACGTGCGGGGTGGGGTCCAGCAGTTGCACGTGGCAAGGAAGCACCAGAAGAACACCCGAAAGTGGACATGCATAGCCATCATACTGCTCATTATTATCATCTTGATTATAGTCCTCCCTATAGTTCTAAGAAATTGA 918 0.5196 MNDLFSGSFSRTNDQVSPDHHHVIEMAATASPTAEGSVNLEKFFQEVEQVKEELKELERLHENLRGSHEKSKILHSAKAVKELRLRMDSDVTLALKNAKLVKVRLEALDRSNQTSQSLPGSGPGSSSDRTRTSVVSGLRKKLKDSMDSFNSLRQKISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIILLIIIILIIVLPIVLRN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01843 305 SMART SynN_4 35 161 IPR006011 GO:0016020
Gma02g01843 305 MobiDBLite consensus disorder prediction 111 136 - -
Gma02g01843 305 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma02g01843 305 SUPERFAMILY t-snare proteins 39 265 IPR010989 GO:0016020|GO:0016192
Gma02g01843 305 Pfam SNARE domain 246 298 IPR000727 -
Gma02g01843 305 Coils Coil 40 70 - -
Gma02g01843 305 Gene3D - 38 170 - -
Gma02g01843 305 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Gma02g01843 305 Gene3D - 199 303 - -
Gma02g01843 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Gma02g01843 305 CDD SNARE_syntaxin1-like 209 269 - -
Gma02g01843 305 CDD SynN 40 197 IPR006011 GO:0016020
Gma02g01843 305 MobiDBLite consensus disorder prediction 111 133 - -
Gma02g01843 305 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 11 300 - -
Gma02g01843 305 SMART tSNARE_6 205 272 IPR000727 -
Gma02g01843 305 PANTHER SYNTAXIN 11 300 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01843 Gma-Chr2 42585103 42587850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01843 26 284 SNARE and Associated Proteins AT3G11820 72.973 3.31e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01843 K08486 - gmx:100808718 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01843 02 42585103 42587850 Gma02g01843 02 42585103 42587850 ECH
Gma19g01908 19 48277700 48279270 Gma02g01843 02 42585103 42587850 PCT
Gma03g01865 03 44634476 44636464 Gma02g01843 02 42585103 42587850 PCT
Gma02g01843 02 42585103 42587850 Gma19g01908 19 48277700 48279270 PCT
Gma02g01843 02 42585103 42587850 Gma03g01865 03 44634476 44636464 PCT