Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01842 ATGGCGATGCAAACCGTTTATCTGAAAGAACATGAAGGACTTGTCCACAGTTCTGTTGGGCAGTTGTCATCTGTAACTTCAGCTCCCTGGTGGAGTGCCTTAGGATCTCAACCAGTTTACGGGGAGTATTGTGGTCAAATGAAGTCCTTTTCATTGGAGATTTCCAACTATGTGGACCAATTTGGTGCTGGTAAGCAAGCGGCACGAGGAGTTGAGCAATTGTTGGATAAAGGACATACAACTCAGTTTACCATCTTTCCAGATGATTGTAAGATGTCAGGTGATGCACAAAATCCTCAGGCAACATTATCACTGCAATCATCACTGGCTGAGCCCCACAATCGTTTTGAGATAGGGGTTAATCAGCCTATGATCTGTGCAAAATATCCTTATATGGATCAATTTTATGGACTCTTCTCAGCATATGGACCTCAAATTTCGGGACGGATAATGCTTCCAATTAACTTGACATCCGATGAAGGACCAACTTACGTAAATGCTAAGCAGTACCATGGAATTATCAGACGTAGGCAATCACGTGCAAAAGCCGTACTTGAGAACAAAATGATAAAACGTCGCAAGCCTTATATGCATGAATCACGCCATCTACATGCGACGCGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAAAGCTCTACTGATGGAAATGGTAAAAATGAAAGTGAAGTGATTAAAACCAGCGGCCGACAATTCCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCCTGCAGTCTGAGGTTGGAATGTTAAATTCATCAAAGCAGACAAATCGAAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGAAGGTTTTGATGGCTTTTCTGTCAATCCTCTTGGATCTTCCGTCCACTCTCTAGCAGACATGATGGGTAGTGAGCATGGTATCATTATGCCCACTAAATGGGTTGCAGCAGTACCAGGTAACTGCTACAACCTTAAAATTTGA 993 0.4371 MAMQTVYLKEHEGLVHSSVGQLSSVTSAPWWSALGSQPVYGEYCGQMKSFSLEISNYVDQFGAGKQAARGVEQLLDKGHTTQFTIFPDDCKMSGDAQNPQATLSLQSSLAEPHNRFEIGVNQPMICAKYPYMDQFYGLFSAYGPQISGRIMLPINLTSDEGPTYVNAKQYHGIIRRRQSRAKAVLENKMIKRRKPYMHESRHLHATRRPRGCGGRFLNTKSSTDGNGKNESEVIKTSGRQFQSSASQSSEVLQSEVGMLNSSKQTNRSSPNISGSEVTSMYSREGFDGFSVNPLGSSVHSLADMMGSEHGIIMPTKWVAAVPGNCYNLKI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01842 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 329 IPR001289 GO:0003700|GO:0006355
Gma02g01842 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Gma02g01842 330 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Gma02g01842 330 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Gma02g01842 330 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Gma02g01842 330 MobiDBLite consensus disorder prediction 200 231 - -
Gma02g01842 330 MobiDBLite consensus disorder prediction 216 231 - -
Gma02g01842 330 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 329 - -
Gma02g01842 330 Gene3D - 159 221 - -
Gma02g01842 330 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01842 Gma-Chr2 42569918 42575404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01842 1 329 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.618 5.81e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma02g01842 CBFB_NFYA 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01842 K08064 - gmx:100808195 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00766 10 10198351 10202091 Gma02g01842 02 42569918 42575404 GST
Gma19g01911 19 48289575 48293923 Gma02g01842 02 42569918 42575404 PCT
Gma03g01867 03 44644896 44649803 Gma02g01842 02 42569918 42575404 PCT
Gma02g01842 02 42569918 42575404 Gma19g01911 19 48289575 48293923 PCT
Gma02g01842 02 42569918 42575404 Gma03g01867 03 44644896 44649803 PCT