Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01835 ATGTGGCGTAATGTCAATGGAGACATTGGCAGTGGTGACAAGCGGAATGGTGGCGATAGTGGTGGCGGTGACCACAATGGTGGAATGATGGTGGTAGCGATGGTGAAAGTGGTGATAATGTGTGTTTCGTGGCCGGTCGGCGTCGTGCGAAGACCGAACAGTGGAACCCTAAGGTTCATCGCCGTCAGCTTGGTCGTTCTCATGAGGATCACCCTCATACGCGCCACCTCATCGTCTTGTTCCCTCCCCAACACCAATTGTCGTGCGACATCAGCCATCGTGTCGTTTAGCCTCCTCACCCCGAAACCCCTTTTGGATACGCCTAAGAAAACCCCAAAGTGGTCGGCGAGGGCTATAAAGTCATATGCAATTGGGGAATTGGAAGCGAGGAAGCTCAAGTATCCAAACACGCGAACTAATGCACTTCTCATGGGGATTTTGGTTGAAGGTTTGTTAGTTACAATTACTATTGGTGTCTTTTTAATTTCAGCAATAGCCGTGACAACTAGTCCTTCTATCGCTCTCAAGAAGAGGAGAAGACGCGTCCACCTTCCAACCGAACCCAATGACCACCTCCCACCACCCATTCCCGAACCACCTTCTAACCACCCACCCTACGCCGAGATGATATACACGGCAATCGAGGCGCTGAAGGAGAAAGACGGTTCTAGCAAGAGGGCAATAGCGAAGTATATTGAGCAAGTGTATACGCAGCTTCCACCGAATCACTCAAACTTGTTGACTCAGCACTTGACTCACTTGAAGAGTAGGGGATTGCTCCAAATGGTAAAAAACTCTTACGGCCTTCCTAGATCTGTGCCCGTGTCTGTTCCTGGACCTGCACCCACCGAAGGGACATCAGTAGTGCCGGCTGCTGTTGTTGCCATCACGACGACTCCGAGGCCCAGAGGTCGGCCTCACAAGGCCCAAAATCCAGTTCAGAACTCACCTCTGCCTCAGGACATTGTCAACGTGCAGGTTCAGCAGAATGCCGAACCGGTCTGGACTGCGCTTGGGCTTGCAGACGAGATTGGGTTATCTCATATACCTCTATATTTGTATCCCTTCCTTAATACAACTAGTAAGTCCAGATTATTTGAGTATTTGAGGCTTACCACTATTGGAATCATTGGTGCCTCTAATAAAACTCCTGAATTGCTTAAAATGAATCCCATTGGAAAGAATTTTCAGTTGGACAAGAACAAATTTTTTCAATTTCAAGGGATCGTTATGCTATTGCTTTGCAAGAAAATGGAGGGAGGAAGAAAGCCCTTCTTTGTTCCTTGTGCTCCCAAGGGCTGCATTGAGTTGTTACTTAGGCACGGTGTGAAAATCAAGGGGAAAAGAGCAGTGATAATTGGAATAAGTAAAATTGTGGGGTTACCCACTTCCTTGCTATTGCAGTAG 1407 0.4812 MWRNVNGDIGSGDKRNGGDSGGGDHNGGMMVVAMVKVVIMCVSWPVGVVRRPNSGTLRFIAVSLVVLMRITLIRATSSSCSLPNTNCRATSAIVSFSLLTPKPLLDTPKKTPKWSARAIKSYAIGELEARKLKYPNTRTNALLMGILVEGLLVTITIGVFLISAIAVTTSPSIALKKRRRRVHLPTEPNDHLPPPIPEPPSNHPPYAEMIYTAIEALKEKDGSSKRAIAKYIEQVYTQLPPNHSNLLTQHLTHLKSRGLLQMVKNSYGLPRSVPVSVPGPAPTEGTSVVPAAVVAITTTPRPRGRPHKAQNPVQNSPLPQDIVNVQVQQNAEPVWTALGLADEIGLSHIPLYLYPFLNTTSKSRLFEYLRLTTIGIIGASNKTPELLKMNPIGKNFQLDKNKFFQFQGIVMLLLCKKMEGGRKPFFVPCAPKGCIELLLRHGVKIKGKRAVIIGISKIVGLPTSLLLQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01835 468 Pfam Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 423 468 IPR020631 GO:0004488
Gma02g01835 468 MobiDBLite consensus disorder prediction 299 318 - -
Gma02g01835 468 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 420 467 IPR036291 -
Gma02g01835 468 Pfam linker histone H1 and H5 family 203 265 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma02g01835 468 Gene3D - 421 468 - -
Gma02g01835 468 Gene3D - 324 420 IPR011989 -
Gma02g01835 468 SUPERFAMILY "Winged helix" DNA-binding domain 197 272 IPR036390 -
Gma02g01835 468 MobiDBLite consensus disorder prediction 1 24 - -
Gma02g01835 468 CDD H15 201 266 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma02g01835 468 PRINTS Histone H5 signature 295 309 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma02g01835 468 PRINTS Histone H5 signature 216 233 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma02g01835 468 PRINTS Histone H5 signature 189 210 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma02g01835 468 PANTHER HISTONE H1-LIKE 183 327 - -
Gma02g01835 468 PANTHER HISTONE H1 183 327 - -
Gma02g01835 468 SMART h15plus2 200 266 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma02g01835 468 Pfam Cell differentiation family, Rcd1-like 347 383 - -
Gma02g01835 468 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 202 271 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma02g01835 468 Gene3D - 199 278 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01835 Gma-Chr2 42447815 42461325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01835 209 276 Single Myb Histone (SMH) Gene Family AT1G49950 42.647 1.45e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Gma02g01835 THF_DHG_CYH_C 1.3e-11 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01835 - - gmx:100788215 291.197