Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01834 ATGGATTCAAAAAGCGTGCCAAGCTTGAAAGGCAGGATCAAGAAGACCAAAGGTCAACAAAAGATCGAGATGAAGAAGGTGAACAATGAACGTTACCTTCAAGTGACGTTCTCAAAGCGTCGCATCGAGATTTTCAAGAAAGCAAGTGAGCTTGCCCCCCTCTACAGTGTGGACCTTGCTGTGATCTTATTCTCACCTTGTAGTCGATTTTTCTCCTTCGGTAGCCCCAACATGGATTCTTTTATCCAACGCTATATGATGCAAGCCCCATCTCCCACTCTTATCCTACAACACCATGGACGAGCATAA 309 0.4498 MDSKSVPSLKGRIKKTKGQQKIEMKKVNNERYLQVTFSKRRIEIFKKASELAPLYSVDLAVILFSPCSRFFSFGSPNMDSFIQRYMMQAPSPTLILQHHGRA 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01834 102 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 73 IPR002100 GO:0003677|GO:0046983
Gma02g01834 102 SUPERFAMILY SRF-like 18 92 IPR036879 GO:0003677|GO:0046983
Gma02g01834 102 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Gma02g01834 102 PANTHER MADS BOX PROTEIN 17 90 - -
Gma02g01834 102 MobiDBLite consensus disorder prediction 1 21 - -
Gma02g01834 102 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gma02g01834 102 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 90 - -
Gma02g01834 102 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gma02g01834 102 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gma02g01834 102 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gma02g01834 102 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01834 Gma-Chr2 42439123 42439431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01834 13 92 Type I MADS-box Gene Family AT5G60440 56.250 2.23e-25 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma02g01834 SRF-TF 4.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01834 - - gmx:102670367 132.88