Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01814 ATGGAGGTTCCAGAAATGGAAGGCAAGACTGAAAGTCATATGACATCAGCAGCAGCCTTTGTGGAAGGGGGGGTTCAAGAAGCTTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGCAAAAGTGATCCTGCCACTGTCACTAATTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCTATCAGCTTGAGGGATGCTACCAGTCAAGAGCTGCTTGAGGCAGTAGAGCTGGAGAGGAGCTTGAGAGATACTCCATCAAGAAATGCTGCGATTTTTCATCATCCAACACTTGGTGATTTTGAATTGCAGCATTTACCCATGGGTGTGAATGAGGCCGATATTGAAGAGCGAATAATTCAACATTTAACTGCTGCAGCCGCAATGAGGAGATCTCATCACCTCAGCCGGAGGGAAGGCCATCGAACTAGGCCATCTGCTCATGGCCGTCCACACTTCTTAGTATACTCAACTCAGCCTAGTGCACCACCATCAGCTGCAGGAGGGGGAAGTGAACCAGCTGCAATTCCTGTAGGAAGTCCATCTACCCCACTTACATTTGATGGAAATGAGCAATCATCACTACAGCAGATCCCCCATGTTCAAACTCAGAGTTCTTCTTTAACTTCTGCCTCTACTGTCTCAACAACAAATCTTCAAGGAGTTCACTCTGATGATAGAAGTTTTGCCTCTCATTCTTTTCCTGCAAGCCAAGACAGAGCACAGCCATCAGAACAATCATTCTCTGATTCTCTGCGCTCCAGATTTAATGCAGTATCCATGAGATACAAAGATTCAATTTCGAAGGGCACAAGGGGATGGAAGGAGAGGCTCTTCTCTCCCAATTCTTCTATGTCAGAACTTGGTTCAGAAGTTAGGAGAGAATTGAATGCTAAAATTGCTAGCGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAAAATAATAGTGCTGCAGGAACTTCTTTATCAAATCATTTGGTGAACCGTTCCATTGCAGAGACAAGCAACCAAAGCAATGTGGAAGCTCGTGGAGAGAACTCTTTGCATGGCAATAATACTCCAACTACTTTTTCTGCAAGCTCAGATTCAAAATGA 1143 0.4523 MEVPEMEGKTESHMTSAAAFVEGGVQEACDDACSICLEDFCKSDPATVTNCKHEFHLQCILEWCQRSSQCPMCWQPISLRDATSQELLEAVELERSLRDTPSRNAAIFHHPTLGDFELQHLPMGVNEADIEERIIQHLTAAAAMRRSHHLSRREGHRTRPSAHGRPHFLVYSTQPSAPPSAAGGGSEPAAIPVGSPSTPLTFDGNEQSSLQQIPHVQTQSSSLTSASTVSTTNLQGVHSDDRSFASHSFPASQDRAQPSEQSFSDSLRSRFNAVSMRYKDSISKGTRGWKERLFSPNSSMSELGSEVRRELNAKIASVSRLMERLETRENNSAAGTSLSNHLVNRSIAETSNQSNVEARGENSLHGNNTPTTFSASSDSK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01814 380 MobiDBLite consensus disorder prediction 149 163 - -
Gma02g01814 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 90 IPR013083 -
Gma02g01814 380 SUPERFAMILY RING/U-box 26 80 - -
Gma02g01814 380 SMART ring_2 33 73 IPR001841 -
Gma02g01814 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 7 379 - -
Gma02g01814 380 MobiDBLite consensus disorder prediction 198 266 - -
Gma02g01814 380 MobiDBLite consensus disorder prediction 145 266 - -
Gma02g01814 380 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 7 379 - -
Gma02g01814 380 MobiDBLite consensus disorder prediction 327 380 - -
Gma02g01814 380 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Gma02g01814 380 Pfam Ring finger domain 32 73 IPR001841 -
Gma02g01814 380 MobiDBLite consensus disorder prediction 329 380 - -
Gma02g01814 380 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01814 Gma-Chr2 42067306 42071654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01814 30 81 C3H Transcription Factor Family AT4G00335 46.154 4.58e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01814 K19043 - gmx:100803582 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01814 02 42067306 42071654 Gma02g01814 02 42067306 42071654 ECH
Gma10g00787 10 10613856 10617269 Gma02g01814 02 42067306 42071654 GST
Gma19g01919 19 48401763 48409064 Gma02g01814 02 42067306 42071654 PCT
Gma03g01879 03 44755188 44760420 Gma02g01814 02 42067306 42071654 PCT
Gma02g01814 02 42067306 42071654 Gma19g01919 19 48401763 48409064 PCT
Gma02g01814 02 42067306 42071654 Gma03g01879 03 44755188 44760420 PCT