Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01811 ATGAAGCTTTCGAGGGAGCTAGGCCTTCAACCTCGCCAAATCGCTGTTTGGTTTCAAAATAGACGAACAAGGTGGAAGACCAAGCAGCTTGAGCAATTGTACGATGTGCTTAAACACCAATATGATGTCGTCTCCAATGAAAAGCAAAAGCTTCAAGAAGAGGTGGAGCAAAGGTACCGGCAGTACCACAACCAGATGAAGATAGTGATATCCTCATCATTTGAGCAATCTGCATTTCTCCAAGTGGAGTCTAAACAAATGTAA 264 0.4318 MKLSRELGLQPRQIAVWFQNRRTRWKTKQLEQLYDVLKHQYDVVSNEKQKLQEEVEQRYRQYHNQMKIVISSSFEQSAFLQVESKQM 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01811 87 ProSiteProfiles 'Homeobox' domain profile. 1 28 IPR001356 GO:0003677
Gma02g01811 87 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 59 IPR045224 GO:0003700
Gma02g01811 87 Coils Coil 34 61 - -
Gma02g01811 87 CDD homeodomain 2 29 IPR001356 GO:0003677
Gma02g01811 87 Gene3D - 1 36 - -
Gma02g01811 87 SUPERFAMILY Homeodomain-like 2 38 IPR009057 -
Gma02g01811 87 ProSitePatterns 'Homeobox' domain signature. 3 26 IPR017970 GO:0000981|GO:0006355
Gma02g01811 87 Pfam Homeodomain 2 26 IPR001356 GO:0003677
Gma02g01811 87 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01811 Gma-Chr2 41985378 41986562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01811 1 55 Homeobox Transcription Factor Family AT5G03790 80.000 3.21e-26 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma02g01811 POX 6.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01811 - - gmx:100806798 112.849