Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01786 ATGGCTAGAAAGAAGCTTCTCCTTTCATACATAAACAATCCCCTAAAGAGGAAGACAATCTTCAAGAAAATAAAAAATGGTTTTCTCAAAAAGGTTGATGAAATCACTACCCTTTGTGATATTCAAGCATGTGCTATCATTTATACTCTAGATGAACCTGAGCCTAAGGTTTGGCTATTTAACCAGGGAATGGAAAGTGTGATTTCCAGGTTTATGGGAGTTTCTAAATTGGCACGAAGCAAGAGAATGTTGTGTCAAGAGAACCTTTTGAAAAGAAACATGATGAAAGCCCAAGGGAAATTGATGAGTGAAATCAAGAAGAAGGAGATTGACCTTTTCATGTGTCAATACTTTTCTAGTTGGAACAACGATAATGCAAACATTATTGATCAGAATGATATCATATTGTTGGCTGATAAAAAATTGGAGATTACAAAGAAAAATGAAATTTTCCAAGTCCAAGAGGTGACACCAGCTATTAAAAATGGAGGAGAAACCATGACTAAAGGAGAGCAAGCACTTGTGGCCAATGTGGATGCCATGCCAAACCTGAATTGGTCTAATGACAATATCAATGATGATGATGGGGATGGGATCGATGTGAAGATTGGAAGATGTTAA 621 0.3655 MARKKLLLSYINNPLKRKTIFKKIKNGFLKKVDEITTLCDIQACAIIYTLDEPEPKVWLFNQGMESVISRFMGVSKLARSKRMLCQENLLKRNMMKAQGKLMSEIKKKEIDLFMCQYFSSWNNDNANIIDQNDIILLADKKLEITKKNEIFQVQEVTPAIKNGGETMTKGEQALVANVDAMPNLNWSNDNINDDDGDGIDVKIGRC 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01786 206 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gma02g01786 206 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Gma02g01786 206 PANTHER MADS BOX PROTEIN 2 157 - -
Gma02g01786 206 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 157 - -
Gma02g01786 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma02g01786 206 Gene3D - 15 98 IPR036879 GO:0003677|GO:0046983
Gma02g01786 206 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma02g01786 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01786 Gma-Chr2 41231801 41232565 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01786 1 190 Type I MADS-box Gene Family AT3G05860 31.472 7.12e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma02g01786 SRF-TF 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01786 - - gmx:102667813 318.161