Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01778 ATGTCCCAGGAAGAGTCTCAAAGATCTCTCTCCATGGACTACCTCAACCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGCCGTCTGGTCCACGGGCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCCGGAAATTCTTCTGCGGACCGGACCCGCCGACCGGCCTCGACCCCGCCGGCGCGTCGCGATCGAACGACACCGGGGCGGCGGCGCGTCCCCCCGGCGTGATCCCGGTGAACTCGGTGGGGTACGAGGTGTTCCTGCTGCTGCTGCAGTTCCTGTACAGCGGGCAAGTCTCCATCGTGCCGCAGAAGCACGAGGCCAGGCCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTCGCCCTCGACACCCTCGCTGCCGCTAGATACTTTGGCGTTGAACAGCTCGCATTGCTCACTCAGAAACAACTAGCGAGCATGGTAGAGAAAGCCTCAATCGACGATGTGATGAAAGTGCTGATAGCGTCTCGAAAGCAAGAGATGCAGCAGCTGTGGAGCACGTGTTCCCACCTGGTGGCGAAGTCGGGTCTCCCTCCGGAGGTGTTGGCAAAGCACCTCCCCATCGATGTGGTGGCGAAGATCGAAGAGCTCCGTCTCAAATCCTCCCTCGCGCGCCGCTCTCTGCTGCCCGGCCACCACCAGCATCACCACGACCTCACCCCAGGCATGGAGGACCAGAAAATCCAGCGAATGCGGCGCGCCCTCGACTCCTCCGACGTCGAACTCGTCAAGCTCATGGTCATGGGCGAGGGTCTCAACCTGGACGAGGCGCTCGCGTTGCACTACGCAGTGGAAAATTGCAGCAGGGAAGTCGTGAAGGCGCTGCTCGAATTGGGGGCCTCGGACGTCAACTTCCCCGCCGGCCCCGCCGGGAAAACGCCCCTGCACGTGGCCGCCGAGATGGTATTGCCGGAGATGGTGGCGGTGCTGCTGGACCACCACGCTGACCCCAACGTCCGAACTGTGGAGGGCGTGACCCCTTTGGACATCCTCAGAACCCTAACCTCGGACTTCCTCTTCAGAGGGGCTGTCCCTGGACTCACCCACATTGAGCCCAACAAGCTCCGCCTCTGCTTGGAGCTTGTGCAATCCGCGGCTCTTGTTTTGTCCCGTGAAGAAGGGAACAATGTCAACAACGACCATAACAACAACGCTTCTGCTTCTGCTACTGCCATTTATCCGCCAATGAGCAGCGAAGACCACAGCAGCGGCAATTCGGACTCCAGGTTGGTGTATCTCAACCTCGGTGCCACGCCACCAATGGGTGAGGACGATGGCAGCCAGAGGGAAGCCATGAACCGTCATGGCTCGCAAGGTGGCCGATGTGACCCACCATCAATGTACCATCACTCTCATGACTTCTAG 1431 0.6073 MSQEESQRSLSMDYLNLLINGQAFSDVTFQVEGRLVHGHRCILAARSLFFRKFFCGPDPPTGLDPAGASRSNDTGAAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLLPGHHQHHHDLTPGMEDQKIQRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGASDVNFPAGPAGKTPLHVAAEMVLPEMVAVLLDHHADPNVRTVEGVTPLDILRTLTSDFLFRGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNVNNDHNNNASASATAIYPPMSSEDHSSGNSDSRLVYLNLGATPPMGEDDGSQREAMNRHGSQGGRCDPPSMYHHSHDF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01778 476 SUPERFAMILY POZ domain 9 161 IPR011333 -
Gma02g01778 476 CDD BTB_POZ_NPR_plant 8 163 - -
Gma02g01778 476 PANTHER REGULATORY PROTEIN NPR5 1 476 - -
Gma02g01778 476 Pfam Domain of unknown function (DUF3420) 198 254 IPR024228 -
Gma02g01778 476 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 476 IPR044284 GO:0099402
Gma02g01778 476 Gene3D Potassium Channel Kv1.1; Chain A 1 196 IPR011333 -
Gma02g01778 476 ProSiteProfiles Ankyrin repeat region circular profile. 312 342 - -
Gma02g01778 476 MobiDBLite consensus disorder prediction 437 476 - -
Gma02g01778 476 Gene3D - 318 358 IPR036770 -
Gma02g01778 476 SMART ANK_2a 277 307 IPR002110 GO:0005515
Gma02g01778 476 SMART ANK_2a 312 341 IPR002110 GO:0005515
Gma02g01778 476 ProSiteProfiles Ankyrin repeat profile. 312 344 IPR002110 GO:0005515
Gma02g01778 476 Pfam Ankyrin repeats (3 copies) 260 342 IPR002110 GO:0005515
Gma02g01778 476 Pfam BTB/POZ domain 16 112 IPR000210 GO:0005515
Gma02g01778 476 ProSiteProfiles BTB domain profile. 25 110 IPR000210 GO:0005515
Gma02g01778 476 SMART BTB_4 25 163 IPR000210 GO:0005515
Gma02g01778 476 Gene3D - 232 317 IPR036770 -
Gma02g01778 476 SUPERFAMILY Ankyrin repeat 271 355 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01778 Gma-Chr2 40887504 40890680 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma02g01778 BTB 6.8e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01778 K14508 - gmx:100811388 909.442