Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01719 ATGGGAACTCCAGAATTCCCAGATCTGGGAAAGCACTGTGCTGTGTCCGATTGCAAGCTCATCGATTTCTTGCCCTTCACCTGCGATCGCTGCGACCAGGTGTATTGTTTGGAGCACAGAAGTTATATTAAACATTTGTGTACAAAAGCTGACAAGCAAGATGTCACAGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACCGAGTGCGACCCATCGAATTACGAGAAAGTCACAAAGAAGAAAAAATGCCCTGTCCCTGGATGCAGAGAGATATTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCACAGTAGAGCATTGTTTAAAGCATCGGTTTGGACCTGATCATAAATGTCCTGGTCCCAAAAATGTGGAATCAAGTTTTTCATTCATGAATCTTTTGAATGGGAGTAAAAAGCAGGAGTCCAAACCCAAGTCAAGCGCAACCACATCATCTAAATGGAGTACAAGCTTTCTTAATGCGGCTTCTAACATTCGAGCTTCGGCTGAGGCTGGTGTCTCAAAGTTGAGTGCCTGGCAGACAGCAAGGGGTGGGGTGGGTCAGAGCCATAGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCCAAGTTTTCCTCAGTTACTACTTTGGTGGACCATGTGCAAAAAGTTCACGAGAGGAGTGGCAACCGATCTGGAGCGAAGATCATAGCTTCGGGAAAGGCCAGACCTGCAGGAATTGCAAATTTGGCTGGAATTTGCAAGCTTAATTCAATAGTGTTAAAACGTGTTGAAATTTCACAACTCGCGCGCTCGAAAACCCTGCTGCACTCTTTCTTCTCTTTCTCCTCCCACCTGAAATCTGCCGGAAACCGCTCGGTCGACACCCACATTGCCCCACATTCATTTCGATACTGTCGGAAACCGCTGGCTGGAACCCACAGAACCTCCTATCGAAGAAAAGTTGAAGAAAACCCTACACTGCTGTTGGAACTGTGTGGGTCGAAAAAACCCTACACTGCTCTTGGAACAGTCGTGGGTGCTCAAAGCTCAAAGCTTTCTACGCTGCCAGTTAACAAGTTGATTGTGCTTGACGAGAGTTACACGCCAAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTGTCTGGAGCTGATCCTAGGTAA 1260 0.4675 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCDQVYCLEHRSYIKHLCTKADKQDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCREILVFSNTIKCRDCTVEHCLKHRFGPDHKCPGPKNVESSFSFMNLLNGSKKQESKPKSSATTSSKWSTSFLNAASNIRASAEAGVSKLSAWQTARGGVGQSHSSGQVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRSGAKIIASGKARPAGIANLAGICKLNSIVLKRVEISQLARSKTLLHSFFSFSSHLKSAGNRSVDTHIAPHSFRYCRKPLAGTHRTSYRRKVEENPTLLLELCGSKKPYTALGTVVGAQSSKLSTLPVNKLIVLDESYTPSKVSIRAGDGFHNLKTVELVKPTGWVYLSLSGADPR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01719 419 SUPERFAMILY Galactose-binding domain-like 371 415 IPR008979 -
Gma02g01719 419 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 247 - -
Gma02g01719 419 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Gma02g01719 419 Gene3D - 2 58 IPR035896 -
Gma02g01719 419 Gene3D - 86 172 IPR035896 -
Gma02g01719 419 ProSitePatterns Zinc finger C2H2 type domain signature. 217 238 IPR013087 -
Gma02g01719 419 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Gma02g01719 419 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gma02g01719 419 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Gma02g01719 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 243 IPR013087 -
Gma02g01719 419 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 247 - -
Gma02g01719 419 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gma02g01719 419 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Gma02g01719 419 SMART c2h2final6 215 238 IPR013087 -
Gma02g01719 419 Pfam Anaphase-promoting complex, subunit 10 (APC10) 375 415 IPR004939 -
Gma02g01719 419 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gma02g01719 419 Gene3D - 362 419 - -
Gma02g01719 419 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01719 Gma-Chr2 36840750 36850261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01719 1 249 C2H2 Transcription Factor Family AT2G41835 61.753 3.34e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma02g01719 ANAPC10 3.1e-11 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01719 - - gmx:100786272 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01719 02 36840750 36850261 Gma02g01719 02 36840750 36850261 ECH
Gma19g01323 19 42536246 42538260 Gma02g01719 02 36840750 36850261 PCT
Gma03g01273 03 38807614 38809486 Gma02g01719 02 36840750 36850261 PCT
Gma02g01719 02 36840750 36850261 Gma19g01323 19 42536246 42538260 PCT
Gma02g01719 02 36840750 36850261 Gma03g01273 03 38807614 38809486 PCT